Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3077 ATGGCTTTGAGGATCATAGCAATTTCTGGGGTTTCTACAGTGTTAAGCTTTATTGCTTTGCACTTCTGCTCAGAATTTTCACTATACAAACTCATTTCTGATGGAATAATTAACTTAGAAAATAATAATAATAATAATATTAATAGTAATAATACCAAGATTGATGAGTTGCCTTTTGATTTTTCCACCACCATTGGGTTGTTGGCGAATTGCTTCATCAATGTTTTCATTCTTATCAATCTTTGTCTCAAGGCTATGTTCTTCACGGAGTTGTATTCTTCTGAAACTCGTAAACTAATTGAACGACTCGTTAATTATATTATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCGACAATATATCAGGCTGGTCTTTGGTCAACATGGTTGACTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTGTGTCAGTATATAGAAGCGATCCGTCCTCTCTGCATCTGTTACTATTCTTTGAGCCATTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTCCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGCCAAATGCCTAAACTGTTTAATACACTAACAGCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCCTCGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGTTGTTCCTAAACATACGGGCATTGCTTGGTGCAATTATAAATCGTATTAAAAGCTTTCATAGGTTAAGGATAGCTCTAGGAGCACTTAATGCTGCTCTTCCTGATGCGACAGATGCGGAGTTAAGAGCATACGATGATGAATGCGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTTGCATGTTTGAGATCCTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTCCCAGGCCGGTCAGAAAATGAAACAAGCTCCAATGTTGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAAAACTCTGCTAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACTCGGCAGACAATGTCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACGGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACATCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGAGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCGTTTCTGTAGGTGAGAGGCCGTCAGGAGGATCAGGTAGCTTACATAGAAGAACTGGTTCGCAATCTGCAAATGATAATATGGCTAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGAGAACAAACTCTGTCACAGTTACTGTGAATAATCTTCTTCAAATGTAA 1773 0.414 MALRIIAISGVSTVLSFIALHFCSEFSLYKLISDGIINLENNNNNNINSNNTKIDELPFDFSTTIGLLANCFINVFILINLCLKAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCVSVYRSDPSSLHLLLFFEPLSIAFETLQAILVHGFQFLDIWLPHSACNSSDCQMPKLFNTLTAGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAIINRIKSFHRLRIALGALNAALPDATDAELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETSSNVGGISSDEQLVRNTNAGLDRQNSARNTMPAVLYPNHIPNSADNVPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWSLWPINPSQASSSNPTVSVGERPSGGSGSLHRRTGSQSANDNMANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3077 590 SMART ring_2 342 383 IPR001841 -
Ahy20g3077 590 ProSiteProfiles CUE domain profile. 550 590 IPR003892 GO:0043130
Ahy20g3077 590 CDD CUE_RIN3_plant 551 588 IPR035667 -
Ahy20g3077 590 SUPERFAMILY RING/U-box 331 390 - -
Ahy20g3077 590 Gene3D - 549 589 - -
Ahy20g3077 590 MobiDBLite consensus disorder prediction 511 544 - -
Ahy20g3077 590 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 6 590 - -
Ahy20g3077 590 Pfam Ring finger domain 340 384 IPR001841 -
Ahy20g3077 590 Pfam CUE domain 554 590 IPR003892 GO:0043130
Ahy20g3077 590 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Ahy20g3077 590 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 6 590 - -
Ahy20g3077 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 392 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3077 Ahy-Chr20 141428084 141437073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3077 68 401 C3H Transcription Factor Family AT3G16090 27.324 5.75e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3077 K10636 - gmx:100819656 917.916