Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3053 ATGGAGAATGATAATAACAATAATAATATGAATGGGGTACAGTGGTGTAACATATGCTCAGAAATGGTGAATCCAATTACTGAAGCTGATAACAAGTGCCCCATTTGTGACACAGAATTTGCTGAGATAATAATGGATAACATAAGGGATCAAAGTGATAATTCTATTGATTTAAGGTCTACTTGGATGTTCATACTTTATGCTCCAATATTTCTAGGCTTGATGGGTGCAATTAGCCCTCTTATTCCCCCCGGCGGCGGCGCCACCCCTCCGGCCGGCGAAGACGAGACGGAGAACGAACTTATGCCGACGAGAAGAGGATCGACTAGTTATGTAATGCATCTCTTTCGAGGTCTTCATGTTAGGAGCTTTGATAATAATAATCGTAGTACTCGCAGTAGAAGTATAGACGCCAGCAACATGGTTGTCATTGATCCGTTTACGGACGGAGCCTTGATTTTTCGAGTTCCGAACATGAATCATCATACAACAACAAGCAATCAAAATGAGGGAACGAGCATTGGATCCTTCCATGAGTTTCTGGTGGGATCAGGATTTGATTTGTTGCTGCAGCAGTTGGCACAGAACGGAGGAAGTGGATATGGGAGTGTTGTGAACCCGCCAACAAAGAAGGCGGCAATAGAAGCATTACCGAGTGTGATTATCAATGAAGAGATTTTACAGTGCATGGTTTGTTTGGAAGAGATTGAGATTGGAAATGAAGCAAAGGAGATGCCATGTCTCCATAAATTTCATGGTGACTGCATAATCTCATGGCTTAAACCTCATAGTTCATGCCCTGTTTGTAGGTTTCAGATGCCTTTTGAGGATTTCACAGCTGAGACTAATTTGGAAGATAGAAACGATGGGAATCAAAATAGTGAGCTTGTCACAGGATCAAGAAGGAACTGGTTTCCAATGCTGCAATCCTTTAATAATTTTCTTCCACCACCTTGA 957 0.4201 MENDNNNNNMNGVQWCNICSEMVNPITEADNKCPICDTEFAEIIMDNIRDQSDNSIDLRSTWMFILYAPIFLGLMGAISPLIPPGGGATPPAGEDETENELMPTRRGSTSYVMHLFRGLHVRSFDNNNRSTRSRSIDASNMVVIDPFTDGALIFRVPNMNHHTTTSNQNEGTSIGSFHEFLVGSGFDLLLQQLAQNGGSGYGSVVNPPTKKAAIEALPSVIINEEILQCMVCLEEIEIGNEAKEMPCLHKFHGDCIISWLKPHSSCPVCRFQMPFEDFTAETNLEDRNDGNQNSELVTGSRRNWFPMLQSFNNFLPPP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3053 318 MobiDBLite consensus disorder prediction 85 104 - -
Ahy20g3053 318 ProSiteProfiles Zinc finger RING-type profile. 229 270 IPR001841 -
Ahy20g3053 318 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 316 - -
Ahy20g3053 318 SUPERFAMILY RING/U-box 219 276 - -
Ahy20g3053 318 Pfam Ring finger domain 228 270 IPR001841 -
Ahy20g3053 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 275 IPR013083 -
Ahy20g3053 318 SMART ring_2 229 269 IPR001841 -
Ahy20g3053 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3053 Ahy-Chr20 141203825 141204781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3053 125 292 C3H Transcription Factor Family AT1G26800 33.929 4.36e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3053 K11982 - adu:107471619 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3053 20 141203825 141204781 Ahy10g2490 10 114415340 114416215 hybridization