Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3041 ATGGAAATTGAATTCCAGCAAGCAAAGCAGTACTCAGTGAAAGATTCCAGCGAGCAAAAAGCAAGAAAAAGAAACAAGAAGAGTAGTAAGTTTGTTGGAGTGAGACAGAGAGCATCAGGGAGATGGGTAGCTGAGATTAAAGACACAACGCACAACATCAGAATGTGGCTTGGCACTTATCAGACTGCAGAGGAAGCGGCCAGAGCCTACGACGAAGCCGCGCGTCTTCTTCGCGGCTCCGGTGCTCGGACCAACTTCATCACTCATCATTTCTCGTCGTCCTTGGATCCTCCTGTCGCTTCCCGGATTCGGAATCTTTTGAACAGCAAAAAGGGAATCAGCAGCAGTGATGAGATCATTGAGAACTCATCATCATCATCATCGCTTTCGGGTTCGAGTGAGACAATTGTTACAGAAAGCACACCAACAATACTATGTGATGATAATGCTTATAGACCAGATTTGAGTAGTTTTGAAAGACAAGTATCAGGTTCAGGTTCAGGTTCACCTTATGCAATTCATGGGGTTCATGGATTCATGGATGCTTTTCAAGTTAAGGACTCTAACGAATCTCTCTGGGATCTTCCACCTTTGATGAGCTCGTTTTTCCCTTAA 615 0.4472 MEIEFQQAKQYSVKDSSEQKARKRNKKSSKFVGVRQRASGRWVAEIKDTTHNIRMWLGTYQTAEEAARAYDEAARLLRGSGARTNFITHHFSSSLDPPVASRIRNLLNSKKGISSSDEIIENSSSSSSLSGSSETIVTESTPTILCDDNAYRPDLSSFERQVSGSGSGSPYAIHGVHGFMDAFQVKDSNESLWDLPPLMSSFFP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3041 204 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Ahy20g3041 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 8 142 - -
Ahy20g3041 204 MobiDBLite consensus disorder prediction 1 31 - -
Ahy20g3041 204 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Ahy20g3041 204 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Ahy20g3041 204 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Ahy20g3041 204 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Ahy20g3041 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 142 - -
Ahy20g3041 204 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Ahy20g3041 204 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Ahy20g3041 204 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3041 Ahy-Chr20 141128721 141129698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3041 14 204 AP2-EREBP Transcription Factor Family AT5G19790 35.156 7.04e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g3041 AP2 4.40E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3041 K09286 - gmx:100796898 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3041 20 141128721 141129698 Ahy10g2478 10 114359107 114360118 hybridization
Ahy16g2241 16 124395182 124396230 Ahy20g3041 20 141128721 141129698 PCT
Ahy6g1912 6 93714829 93715934 Ahy20g3041 20 141128721 141129698 PCT
Ahy20g3041 20 141128721 141129698 Ahy16g2241 16 124395182 124396230 PCT
Ahy20g3041 20 141128721 141129698 Ahy6g1912 6 93714829 93715934 PCT