Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3040 ATGAACGATCTTCTAACGGAATCATTTGAGATCCCACGTGGCCAAGGTCGTGGTGGTGTAGACATTGAGTTAGGAGCATATGGAATGAACTCAGGAGAACTGGGCTTGAATCTTTTCTTCAAAAAGATTCAAGAGCTCGATAAACAATATGCTAAGCTGGATATGCTTTTGAGAAGGCTCCAGGAAGCCCATGACGAGTCAAGATCTGTGACCAAGGCTCCTGCCATGAAGGCTATTAAAGAGAGAATGGAGAAAGATGTTGATGAAGTTAAAAAAACTGGATATTACATAAAGACAAAAATTGAAGAACTGGACAAAGAGAATTTGGCAAATAGGCAGAAACCTGGATGTGGAAAAGGATCAGGTGTTGACCGATCACGAACAGCAACAACTATTAACTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTTAGAGAAGCCATTCATCAAGAATACCGTGAAGTTGTTGAGAGACGTGTGTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAGCAAATCTTCCAGAAGGCAATTCAGGAACAAGGAAGAGGGCAGATAATGGACACACTAGCAGAAATTCATGAGCGGCATGAAGCAGCTAGAGACGTTGAGAAGAAGCTTGTTGAATTACAACAGATTTTTATGGATATGGCAGTATTAGTCGATGCACAAGGTGACATGCTTAACAACATAGAAACACAGGTTTTAAATGCAGTAGATCACGTGCAACAGGGCAATACAGCCCTCCATAAGGCAAAGAAAATTCAAAGGAAATCTAGAAAATGGATGTGCATTGCACTCATAATATTTCTTGTCATTCTTATAATCCTCCTTACCAGTGTCATCAAACCATGGCTTGCCAAAAAGCAGGGTGTTTAA 927 0.4078 MNDLLTESFEIPRGQGRGGVDIELGAYGMNSGELGLNLFFKKIQELDKQYAKLDMLLRRLQEAHDESRSVTKAPAMKAIKERMEKDVDEVKKTGYYIKTKIEELDKENLANRQKPGCGKGSGVDRSRTATTINLKKKLKDKMAEFQTLREAIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIHERHEAARDVEKKLVELQQIFMDMAVLVDAQGDMLNNIETQVLNAVDHVQQGNTALHKAKKIQRKSRKWMCIALIIFLVILIILLTSVIKPWLAKKQGV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3040 308 ProSitePatterns Syntaxin / epimorphin family signature. 212 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy20g3040 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Ahy20g3040 308 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Ahy20g3040 308 Pfam Syntaxin 39 241 IPR006011 GO:0016020
Ahy20g3040 308 Gene3D - 197 299 - -
Ahy20g3040 308 Coils Coil 135 155 - -
Ahy20g3040 308 SMART tSNARE_6 201 268 IPR000727 -
Ahy20g3040 308 SMART SynN_4 31 157 IPR006011 GO:0016020
Ahy20g3040 308 PANTHER - 3 298 - -
Ahy20g3040 308 PANTHER SYNTAXIN 3 298 IPR045242 -
Ahy20g3040 308 CDD SynN 39 193 IPR006011 GO:0016020
Ahy20g3040 308 Pfam SNARE domain 242 294 IPR000727 -
Ahy20g3040 308 Gene3D - 34 160 - -
Ahy20g3040 308 Coils Coil 43 66 - -
Ahy20g3040 308 CDD SNARE_syntaxin1-like 205 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3040 Ahy-Chr20 141119818 141126708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3040 1 304 SNARE and Associated Proteins AT3G03800 69.737 1.80e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3040 K08486 - gmx:100306329 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3040 20 141119818 141126708 Ahy10g2477 10 114350532 114357125 hybridization