LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g3036	ATGGTGGGTTTATTGCTGTTGAACTGCTGGGTAGCCTTGGCAGATGCAGAGTACTTGAAATATAAAGATCCAAAACAGCCTTTGAATGTTCGAATCAAGGATCTCATAAACAGAATGACTTTGGAGGAGAAGATTGGCCAAATGGTGCAGATTGATCGCACTGTTGCATCAGCTAATGCCATTAACAAGTACTTTATAGGGAGTGTGCTAAGTGGGGGAGGAAGTGTTCCAAAGAAGCAGGCTAGTGCAGAGGATTGGATTAAGATGGTGAATGATTTTCAAAAGGGTGCTTTATCAACAAGGCTGGGAATTCCTATGATTTATGGAATTGATGCTGTTCATGGCCATAACAATGTCTACAAAGCAACCATTTTTCCTCACAACATTGGGATGGGAGCTACTAGGGACCCAGAACTTGTGAAGAAGATTGGAGAAGCAACTGCACTTGAAGTTAGAGCTACCGGAATTCCATATGTGTTTGCACCGTGCATTGCGGTTTGTAGAGATCCAAGGTGGGGTCGCTGCTATGAAAGTTACAGTGAAGATCCTACACTAGTCCAAGCTATGACAGAGATCATTCCCGGATTGCAAGGTCAAATCCCTGCAAATTCACGCAAGGGTGTTCCCTTTGTTGCTGGAAAAAAGAATGTAGCAGCTTGTGCTAAACACTATGTTGGAGATGGAGGAACCACAAAAGGAATCAATGAGAACAACACAGTGATAGATAGACATGGATTGCTTAGCATTCACATGCCAGGCTACTATAACTCAATCATCAAGGGAGTGTCTACTGTCATGGTTTCTTTCTCAAGCTGGAATGGAGTTAAGATGCACGCTAACCGTCAACTAGTCACTGGCTTCCTCAAAAACACACTTCGTTTCAGGGGTTTTGTTATATCAGATTGGCAGGGAATTGATAGGATTACTTCCCCTCCTCATGCCAACTATACATATTCCATTCTTACTGGAATTACTACTGGAATTGACATGATAATGGTTCCTTTCAACTACACAGAATTCATAGATGGCCTAACCTCTCTAGTGAAACATAATTTCATACCCACGAGTCGAATTGATGATGCAGTGAGGAGAATTTTAAGGGTTAAGTTCATGATGGGCCTTTTTGAGAATCCACTCGCTGATTACAGCTTAGTCAACCAACTTGGGAGACAGGAGCATAGAGACTTAGCTAGAGAAGCTGTAAGGAGATCATTAGTATTGTTAAAGAATGGTCAATATGCACATAAACCATTGCTTCCTCTTCCTAAGAAGGCTTCAAAAATACTTGTTGCCGGAAGCCATGCTGATAATCTTGGTTATCAGTGTGGTGGTTGGACCATTGATTGGCAAGGACTAAGTGGAAACAATCTTACCACTGGCACAACTATTCTAAGTGCTATTAGAAACACTGTTGATAAAGACACTAAGGTGGTTTACAAGGAGAACCCTGACTTGGAGTATGTGAAGTCCAATGATTTTTCATATGCAATTGTGGTAGTTGGAGAGCATCCATATGCAGAGACATTTGGAGACAGCTTGAACTTGACAATAGCAGATCCTGGTCCACAAACCATAACAAATGTGTGTGGAGGAGTGAAATGTGTTGTTGTAGTAATCTCTGGTCGCCCTGTGGTTATACAGCCATATCTTGACACCATTGAAGCACTTGTTGCTGCATGGCTTCCAGGAACAGAGGGTCAAGGTGTTGCTGATGTCTTGTTTGGTGATTATGGTTTCACTGGCAAGCTTCCAAGAACATGGTTTAAGACAGTTGATCAGTTACCTATGAATGTTGGTGATTCAGATTATGATCCACTTTATCCATTTGGATTTGGCCTTACAACCAAACCCAACAAAGTAGAATAA	1866	0.418	MVGLLLLNCWVALADAEYLKYKDPKQPLNVRIKDLINRMTLEEKIGQMVQIDRTVASANAINKYFIGSVLSGGGSVPKKQASAEDWIKMVNDFQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNIGMGATRDPELVKKIGEATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPTLVQAMTEIIPGLQGQIPANSRKGVPFVAGKKNVAACAKHYVGDGGTTKGINENNTVIDRHGLLSIHMPGYYNSIIKGVSTVMVSFSSWNGVKMHANRQLVTGFLKNTLRFRGFVISDWQGIDRITSPPHANYTYSILTGITTGIDMIMVPFNYTEFIDGLTSLVKHNFIPTSRIDDAVRRILRVKFMMGLFENPLADYSLVNQLGRQEHRDLAREAVRRSLVLLKNGQYAHKPLLPLPKKASKILVAGSHADNLGYQCGGWTIDWQGLSGNNLTTGTTILSAIRNTVDKDTKVVYKENPDLEYVKSNDFSYAIVVVGEHPYAETFGDSLNLTIADPGPQTITNVCGGVKCVVVVISGRPVVIQPYLDTIEALVAAWLPGTEGQGVADVLFGDYGFTGKLPRTWFKTVDQLPMNVGDSDYDPLYPFGFGLTTKPNKVE*	622

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy20g3036	621	PRINTS	Glycosyl hydrolase family 3 signature	287	305	IPR001764	GO:0004553\|GO:0005975
	Ahy20g3036	621	PRINTS	Glycosyl hydrolase family 3 signature	125	144	IPR001764	GO:0004553\|GO:0005975
	Ahy20g3036	621	PRINTS	Glycosyl hydrolase family 3 signature	171	187	IPR001764	GO:0004553\|GO:0005975
	Ahy20g3036	621	PRINTS	Glycosyl hydrolase family 3 signature	101	117	IPR001764	GO:0004553\|GO:0005975
	Ahy20g3036	621	PRINTS	Glycosyl hydrolase family 3 signature	217	233	IPR001764	GO:0004553\|GO:0005975
	Ahy20g3036	621	PANTHER	BETA-D-GLUCOSIDE GLUCOHYDROLASE	5	619	-	-
	Ahy20g3036	621	SUPERFAMILY	(Trans)glycosidases	19	404	IPR017853	-
	Ahy20g3036	621	Gene3D	-	14	389	IPR036962	GO:0004553\|GO:0005975
	Ahy20g3036	621	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	405	614	IPR036881	GO:0004553\|GO:0005975
	Ahy20g3036	621	Pfam	Glycosyl hydrolase family 3 N terminal domain	40	368	IPR001764	GO:0004553\|GO:0005975
	Ahy20g3036	621	Gene3D	-	390	616	IPR036881	GO:0004553\|GO:0005975
	Ahy20g3036	621	Pfam	Glycosyl hydrolase family 3 C-terminal domain	405	614	IPR002772	GO:0004553\|GO:0005975
	Ahy20g3036	621	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	5	619	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g3036	Ahy-Chr20	141078215	141082660	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy20g3036	4	620	Glycoside Hydrolase	AT5G20950	75.365	0.0	954

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy20g3036	K05349		-	gmx:100819414	1071.23

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g3036	20	141078215	141082660	Ahy10g2473	10	114321551	114328810	hybridization
	Ahy20g3036	20	141078215	141082660	Ahy14g3094	14	139706580	139707592	PCT
	Ahy20g3036	20	141078215	141082660	Ahy4g2731	4	125328492	125329358	PCT
	Ahy14g3094	14	139706580	139707592	Ahy20g3036	20	141078215	141082660	PCT
	Ahy4g2731	4	125328492	125329358	Ahy20g3036	20	141078215	141082660	PCT