Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy20g3007 | ATGACACACAAATCAAGGAAGGTATTAGATTTAAAAAGAAAAACCATAAGAAGACAGTGTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTTCTGTTAGGCCCTATCCAGCCGGTGGAAAGGCCAAAAGAACAACAAACTAGAGACGTGGATAGCAGTCCCAACACTCAGAACTTGAGACTTAATGAGGGACGGCAGAAGAAAAGATTGAATGAACCACTGTTAGGAGGAGTCCAGGGACAATCGAGGAAAAAACTGAGAGCACCAGTGTCATCTGCTTCTAAAGGTAGACAGTTGGAAAATGACACACAAATCAAGGAAGGTATTAGATTTAAAAAGAAAAACCATAAGAAGACAGTGTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTTCTGTTAGGCCCTATCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAGCAACTGTCTCAAACGAAAGCACCATGTTACTTTCCAACTAAATTCTTCAGGAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTTATGCCTTTATCTCTGCTGGTTGGAACTTTTTCGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCGTCAATAGAAAAGATCCAGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAACCAGTGACTCATGGGATTCAGCTCCTGAAAGAAGTTAAGGAGCTCAATTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGGAGTTGTGGCCTGTTACGATAATCTACAATCCGTCGTCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTTTTTAATGTTCATATCTGTAGAGTCAAATGCTAG | 1176 | 0.3827 | MTHKSRKVLDLKRKTIRRQCLSIKILMAKGIEEEKILNLLLGPIQPVERPKEQQTRDVDSSPNTQNLRLNEGRQKKRLNEPLLGGVQGQSRKKLRAPVSSASKGRQLENDTQIKEGIRFKKKNHKKTVSVNQDSNGKRNRRRKDSESSVRPYPARPESLKEAKKFKWEKPSFIIKIKQLSQTKAPCYFPTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCYAFISAGWNFFARASKLQAGDVCLFKLVNRKDPVLDVHICRRQRRESLSKPVTHGIQLLKEVKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKELWPVTIIYNPSSRNTFISAGWSSFARASKLEAGDVCVFELINKKDLFNVHICRVKC* | 392 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy20g3007 | 391 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 90 | 265 | - | - | |
| Ahy20g3007 | 391 | Pfam | B3 DNA binding domain | 310 | 389 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | Pfam | B3 DNA binding domain | 185 | 267 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | PANTHER | B3 DOMAIN-CONTAINING | 276 | 389 | - | - | |
| Ahy20g3007 | 391 | PANTHER | B3 DOMAIN-CONTAINING | 90 | 265 | - | - | |
| Ahy20g3007 | 391 | SUPERFAMILY | DNA-binding pseudobarrel domain | 289 | 390 | IPR015300 | - | |
| Ahy20g3007 | 391 | SUPERFAMILY | DNA-binding pseudobarrel domain | 166 | 266 | IPR015300 | - | |
| Ahy20g3007 | 391 | CDD | B3_DNA | 187 | 265 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | SMART | B3_2 | 296 | 390 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | SMART | B3_2 | 172 | 267 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | Gene3D | - | 154 | 268 | IPR015300 | - | |
| Ahy20g3007 | 391 | Gene3D | - | 280 | 390 | IPR015300 | - | |
| Ahy20g3007 | 391 | MobiDBLite | consensus disorder prediction | 48 | 157 | - | - | |
| Ahy20g3007 | 391 | ProSiteProfiles | B3 DNA-binding domain profile. | 171 | 267 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | MobiDBLite | consensus disorder prediction | 135 | 157 | - | - | |
| Ahy20g3007 | 391 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 276 | 389 | - | - | |
| Ahy20g3007 | 391 | ProSiteProfiles | B3 DNA-binding domain profile. | 337 | 390 | IPR003340 | GO:0003677 | |
| Ahy20g3007 | 391 | CDD | B3_DNA | 294 | 388 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy20g3007 | Ahy-Chr20 | 140875200 | 140878961 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy20g3007 | 286 | 381 | REM Transcription Factor Family | AT1G49480 | 35.052 | 1.67e-08 | 52.8 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | B3 | Ahy20g3007 | B3 | 6.70E-14 | CL0405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy20g3007 | - | - | ahf:112785297 | 787.719 |