Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3006 ATGGCTTCCTTTATTTTCCAAACAAACAAACATTCTCCTTCCTCTCTGAGCTGTTTCTTTAAGATTGGTCTCAAAAAAAGCCTTGAAGATGGAAACCTTAAGTTAACAAAAAAGTTCAGTAAGAAATATGGTGATAGTCTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTTTGTATGATGGTGTGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATAATGGCCATATGCTGTATTTTGAGTACAATGAAACTTCTAACATTGAAGTACGCATTTTTGACATCATTAGTGGCTCTGAAATAGACTATCCTTCCTTGGATCACATCGGCCATGACAATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAAGTATCATCTCCTTCTACAAGTAAAAGATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATGAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAAGAGACAAGTCTTAAGATGCCAACAATTCAAAGTGCCAGAGTTGATCCTGATAGTATGTAA 621 0.3849 MASFIFQTNKHSPSSLSCFFKIGLKKSLEDGNLKLTKKFSKKYGDSLPNPVYLKPPDGTAWKIDWSLYDGVILFENGWKEFASYYSLDNGHMLYFEYNETSNIEVRIFDIISGSEIDYPSLDHIGHDNSIEILNELPPRGWPRKTEVSSPSTSKRLRSSVKTGDVEKGPDEQNWMQCCKNEEASQSEETSLKMPTIQSARVDPDSM* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3006 206 CDD B3_DNA 18 109 IPR003340 GO:0003677
Ahy20g3006 206 PANTHER B3 DOMAIN-CONTAINING 17 189 - -
Ahy20g3006 206 MobiDBLite consensus disorder prediction 177 206 - -
Ahy20g3006 206 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 189 - -
Ahy20g3006 206 Pfam B3 DNA binding domain 21 109 IPR003340 GO:0003677
Ahy20g3006 206 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
Ahy20g3006 206 MobiDBLite consensus disorder prediction 141 206 - -
Ahy20g3006 206 Gene3D - 12 110 IPR015300 -
Ahy20g3006 206 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Ahy20g3006 206 SMART B3_2 19 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3006 Ahy-Chr20 140828989 140830174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3006 19 120 B3 DNA Binding Superfamily AT3G18990 36.275 4.51e-15 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3006 B3 4.10E-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3006 - - aip:107622419 426.787