Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3005 ATGGTTCCCTCTAACTGTCAACAAAACAAGCATTCTCCTTCTAATTCTACTGTGATCCGTTTCTTTAAGGTTATCCTCAGAAAAACTCTTCAAGATGAAAACTTTAAGTTACCAAAAAAGTTCACCAGAATATATGGTTCTGGTCTATCAAACCCGTTGTATCTTAAGCCTCCTGATGGTACTGAATGGAGAGTAGATTGGATCAATCAAGATGGTGGAATTTTGTTTAAACAAGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATGATGGCTATGTGTTATGGTTTGAGTATAATATTGGAACTTCTCACATTGAAGTACAAATATGTGACATGAGTGGCCTCCAAATAAAGTATCCTGTCAATGATCAGATCAAAGAGCACCCGCCACAACACAGGGGCCATCCGGTGAAAAGGCCAAAAGAACAACAAACTATAGACGTGGATAACAGTCCCAACACTCAAAACATGAGACTTAACGAGGGACGGCAGGAGAAAAGATTGAATGAACCAATGTCAGGAGTCGGGGGCCAATCGAGGAAAAAACTGAGAGCACCAGTGTCATCTGCTTCTAAAGGTAGACAGTTGGAAAGTGACACACAAATCAGAGAAAGTATTAAATCTAAAAAGAAAAACCATAAGATGCCTGTCAATCAAGATTCTAATGGCAAAAGAAATAGAAAAAGAAAAGATTCTGAATCTTCTGTTAGGCCCTGTCTTGCAAGACCTAAATCTCTGAAAGAAGCTAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAGCAACTGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGGAAGTATTTTGTAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGATGCCTTTATCTCTGCTGGTTGGAACTTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCGTCAATAGAAAAGATCCAGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAACCAGTGACTCATGGGATTCAGCTCCTGAAAGAAGTTGAGGAGCTCAATTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGAAGTTGTGGCCTGTTACGATAATCTACAATCCGTCGTCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATGAAAAAGATCTGTTTAATGTTCATGTCTGTAGAGTCCAATGCTAG 1437 0.3862 MVPSNCQQNKHSPSNSTVIRFFKVILRKTLQDENFKLPKKFTRIYGSGLSNPLYLKPPDGTEWRVDWINQDGGILFKQGWKEFVAYYSLDDGYVLWFEYNIGTSHIEVQICDMSGLQIKYPVNDQIKEHPPQHRGHPVKRPKEQQTIDVDNSPNTQNMRLNEGRQEKRLNEPMSGVGGQSRKKLRAPVSSASKGRQLESDTQIRESIKSKKKNHKMPVNQDSNGKRNRKRKDSESSVRPCLARPKSLKEAKFKWEKPSFIIKIKQLSQTRAPCYFSTKFFRKYFVNNPQNANIRFGKKLFPVKLIYRPSSCDAFISAGWNFFARASKLQAGDVCLFKLVNRKDPVLDVHICRRQRRESLSKPVTHGIQLLKEVEELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKKLWPVTIIYNPSSRNTFISAGWSSFARASKLEAGDVCVFELINEKDLFNVHVCRVQC* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3005 478 ProSiteProfiles B3 DNA-binding domain profile. 300 354 IPR003340 GO:0003677
Ahy20g3005 478 ProSiteProfiles B3 DNA-binding domain profile. 424 477 IPR003340 GO:0003677
Ahy20g3005 478 PANTHER B3 DOMAIN-CONTAINING 361 476 - -
Ahy20g3005 478 PANTHER B3 DOMAIN-CONTAINING 14 352 - -
Ahy20g3005 478 MobiDBLite consensus disorder prediction 126 146 - -
Ahy20g3005 478 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Ahy20g3005 478 MobiDBLite consensus disorder prediction 198 241 - -
Ahy20g3005 478 CDD B3_DNA 274 352 IPR003340 GO:0003677
Ahy20g3005 478 SUPERFAMILY DNA-binding pseudobarrel domain 15 114 IPR015300 -
Ahy20g3005 478 Pfam B3 DNA binding domain 274 354 IPR003340 GO:0003677
Ahy20g3005 478 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Ahy20g3005 478 Pfam B3 DNA binding domain 396 476 IPR003340 GO:0003677
Ahy20g3005 478 Gene3D - 14 115 IPR015300 -
Ahy20g3005 478 CDD B3_DNA 381 475 IPR003340 GO:0003677
Ahy20g3005 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 352 - -
Ahy20g3005 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 361 476 - -
Ahy20g3005 478 SUPERFAMILY DNA-binding pseudobarrel domain 253 353 IPR015300 -
Ahy20g3005 478 Gene3D - 367 477 IPR015300 -
Ahy20g3005 478 Gene3D - 244 355 IPR015300 -
Ahy20g3005 478 MobiDBLite consensus disorder prediction 126 241 - -
Ahy20g3005 478 SUPERFAMILY DNA-binding pseudobarrel domain 376 476 IPR015300 -
Ahy20g3005 478 CDD B3_DNA 20 112 IPR003340 GO:0003677
Ahy20g3005 478 SMART B3_2 383 477 IPR003340 GO:0003677
Ahy20g3005 478 SMART B3_2 259 354 IPR003340 GO:0003677
Ahy20g3005 478 SMART B3_2 21 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3005 Ahy-Chr20 140825420 140828486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3005 380 468 B3 DNA Binding Superfamily AT3G18990 36.667 3.19e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3005 B3 4.30E-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3005 - - adu:107471893 756.518