Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2996 ATGGTGTATTGTGATCACTGTGTCCAAAATGTTAGTGCGTTGAGAACTGATTATGGTTCTTTATGTTGTGGCACATGTGGTAAGGTGTTGCAAGATTATCTTTTTTCTGAAGAGGCCACATTTGTGAAAAATTCATCTGGACAGAGCCAATTATCTGGCCATTATGTCAGAACAATTCAAAGCGAATTCTCTGCCTCACGTCAAAGGACTATAGATAGAGCTTTTGAGGAGATCAAATACTTAAGTTATGGCCTTGGAGTGAACGATGATAACATGACCGTGCAAGCTGTGGCCTTTTATAGAATAGCACTTGAGCGGAATTTTACCCGGGGACGTAAATCAGAGCAAGTGCAGGCTGCTTGTCTTTATATTGCATTCCGTTATGTTCTAGGTGCAGTTTTTTTACAGCTGTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAGAAGCCTGTTGATCCCAGTCTTTTTATTTATAAATACACAAATAATTTGTTAAAGGAAAGGAACTTGGTTGTCTCTGAAACCGCGCTGAGTATTATTGCTAGCATGAAACGTGACTGGATGCAGGTGGTAATATTGCTAATGTTTGAAAAACAGACAGGGAGAAAGCCAAGCGGATTATGTGGTGCAGCATTATATATGTCTGCTCTTGCAAATGGTTTTAAGTGCTCTAAGTCAGACATTCTAAGAATCGTCCATATATGTGAAGCAACTTTGACTAAGCGGTTGGTAGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAGCAGCCAATTAAAGTACCAAATGGTGAATTGAACAAATGTACTTCCGAAGATCTACTATGTGAGCACAAGGGTACTGCTGTGCCTTATTTTGCACTTGGATTGTGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGTGGACTTGATGGTGGCTTGGATCCTCCTGCTTTCCAGCGTGCTGAGAGGGAGAGAAGGGTAAAATCAGATTCTGAGGAAAGTGCCAATAGAACAGATGATATGGTGAAAGCATCAAATGGTGAACATGGAAGCCAAAAAGAGGGATTACATGCCTCAGAGCCAAAAAGTGTTGGAGATAATTATGAGCACACAGCCACTAAAGATGGCAACCTTGATGAATCACATGAAGATGATATGAAGACTAAAACTCATGATGACTCAGAAAGTTTATCTGATATTGATGATCTAGAGGTTGATAGCTACCTTCACAATGAGGAGGAAAAACATTACAAGAAGATTATATGGGAAAATATGAATCGAGAATATCTTGAGGAACAAGCAGCTAAGGAAGCAGCTGCTGCAGCTGCTAAGAAATTTGCTGAGGCAAATTGTTCCGAAGAGGAGCTAGCAGCAAGAGAATTTGCGAAATCGGCTGCTGATGCTGTGGCAAAGTCCAGAAAGGAAATGAGACAAAAACGAGCTCAAGAGGCCAAAAATTCTGGTCCTGCTCAATCTGCTATAGAGGCCACCCGGCAGATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCTTAGAAAAGCTATTTGGTGATCCTGTATCTACAGAAAATCCCAAGAAAGTACGATTTGATCCATCTTTGGACAACGATGAAAATACAGAATCCAAATTAGAGGAAAAACTAAAGGATGATGATGCAGTAGGAGTAGAAGATGAAGTTGAGGATGGTGACATGACTGGAGAATATGAAGATAATATGTATCAGGAAAATGGAGATGAGGCATATGAGGATGAATATTATGACGATGGTGATTATTGA 1818 0.401 MVYCDHCVQNVSALRTDYGSLCCGTCGKVLQDYLFSEEATFVKNSSGQSQLSGHYVRTIQSEFSASRQRTIDRAFEEIKYLSYGLGVNDDNMTVQAVAFYRIALERNFTRGRKSEQVQAACLYIAFRYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKERNLVVSETALSIIASMKRDWMQVVILLMFEKQTGRKPSGLCGAALYMSALANGFKCSKSDILRIVHICEATLTKRLVEFENTESASLTIEELNTMAKEHEKQPIKVPNGELNKCTSEDLLCEHKGTAVPYFALGLCETCYKDFDKLSGGLDGGLDPPAFQRAERERRVKSDSEESANRTDDMVKASNGEHGSQKEGLHASEPKSVGDNYEHTATKDGNLDESHEDDMKTKTHDDSESLSDIDDLEVDSYLHNEEEKHYKKIIWENMNREYLEEQAAKEAAAAAAKKFAEANCSEEELAAREFAKSAADAVAKSRKEMRQKRAQEAKNSGPAQSAIEATRQMLRTKRLSSKVNYDRLEKLFGDPVSTENPKKVRFDPSLDNDENTESKLEEKLKDDDAVGVEDEVEDGDMTGEYEDNMYQENGDEAYEDEYYDDGDY* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2996 605 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 533 IPR029529 GO:0000126|GO:0000995|GO:0006383
Ahy20g2996 605 Pfam Brf1-like TBP-binding domain 408 529 IPR011665 -
Ahy20g2996 605 Pfam Transcription factor TFIIB repeat 151 250 IPR013150 GO:0017025
Ahy20g2996 605 Pfam Transcription factor TFIIB repeat 69 127 IPR013150 GO:0017025
Ahy20g2996 605 MobiDBLite consensus disorder prediction 537 567 - -
Ahy20g2996 605 Coils Coil 251 271 - -
Ahy20g2996 605 SUPERFAMILY Cyclin-like 153 260 IPR036915 -
Ahy20g2996 605 MobiDBLite consensus disorder prediction 528 605 - -
Ahy20g2996 605 CDD CYCLIN 96 128 IPR013763 -
Ahy20g2996 605 MobiDBLite consensus disorder prediction 482 504 - -
Ahy20g2996 605 MobiDBLite consensus disorder prediction 363 406 - -
Ahy20g2996 605 Gene3D - 154 256 - -
Ahy20g2996 605 MobiDBLite consensus disorder prediction 320 408 - -
Ahy20g2996 605 Gene3D - 2 148 - -
Ahy20g2996 605 MobiDBLite consensus disorder prediction 568 605 - -
Ahy20g2996 605 MobiDBLite consensus disorder prediction 327 357 - -
Ahy20g2996 605 SUPERFAMILY Cyclin-like 74 143 IPR036915 -
Ahy20g2996 605 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 533 IPR000812 GO:0006352|GO:0070897
Ahy20g2996 605 Gene3D Single helix bin 399 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2996 Ahy-Chr20 140689318 140700442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2996 1 514 Inorganic Solute Cotransporters AT2G01280 40.190 4.23e-101 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2996 K15196 - gmx:100789154 694.115