Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2959 ATGGGAGATGAAAGCAATTGCAGCATGAACATGGAGGATGAAGTTCAAGGCGTTGAAGAAAGAGATCCAGAAAGCAACACCAATACCAATCCATTACACGAGCCACTTCTCAAGAGAAACAGAACTCTCTCTTCCAATCCACTCGCTCTCGTTGGAGCCAAAGTTTCCTACATAGAAAGCTTGGACTACGAGATCAATGAGAATGATCTCTTCAAGCAAGATTGGAGAACAAGGTCAAGAGCTCAGGTGTTGCAGTACATATTCTTGAAATGGTCGCTCGCGTTTCTTGTTGGTCTTCTCACCGGTGTCATCGCCACTCTCATCAATCTTGCCATTGAGAACATTGCAGGATACAAGCTTCTTGCCGTAGTTCAGTACATCCACAAAGAAAGGTACATGGCGGGTTTTCTATATTTCACGGGTGTTAATTTCCTATTAACGTTCGTTGCTGCAATTCTCTGTGTGTGTTTTGCACCAACAGCAGCTGGGCCTGGAATACCAGAAATCAAAGCTTATCTTAATGGTGTTGACACTCCCAACATGTACGGTGCCACAACATTGTTTGTCAAGATTATCGGAAGCATTGGAGCTGTTGCTGCAGGGCTAGATTTAGGAAAAGAAGGGCCATTGGTACATATTGGAAGCTGCATTGCTTCCTTGTTAGGCCAAGGAGGCCCTGACAACTACCGGATCAAGTGGCGGTGGCTGCGATACTTTAACAACGACCGTGACCGCCGTGATCTGATTACCTGCGGCGCATCTTCGGGTGTTTGCGCGGCTTTCAGGGCCCCTGTAGGCGGAGTCCTGTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCATTGCTTTGGAGAACTTTCTTCAGCACTGCTGTGGTGGTGGTTATTCTAAGAGCTTTCATTGAACTGTGCCATGAAGGGAAGTGTGGTCTTTTTGGTGAAGGAGGGCTTATAATGTTTGATGTTAGCAATGTTAGTGTGAGGTACCATGTTATGGATATTATCCCTGTTGCCTTAATTGGAGTCATTGGAGGCGTTTTGGGAAGCCTTTATAACCATGTTCTCCACAAGGTCCTCAGGCTCTACAATCTCATTAATCAGAAAGGAAAGATTTATAAGCTGCTACTGAGTCTTTCAGTAGCATTGTTCACATCAGCATGCCAATATGGTCTGCCATTCCTTGCAAAATGCAGTCCTTGTGATCCATCGCTTCCAAAATCCATTTGCCCCACCAACGGAAGGTCTGGAAATTACAAACAATTCAACTGCCCAGACGGGCACTACAATGATCTTGCCACTCTGCTCCTGACCACCAACGACGACGCCGTTCGAAACATATTCTCTTCCAACACACCTAATGAATACCACCCATCCTCTATCCTAATCTTCTTTGCACTCTATTGCATCTTAGGACTAGTCACCTTCGGCATAGCCGTCCCCTCCGGCCTCTTCCTTCCCATAATTCTCATGGGCTCCGGCTACGGCCGCCTTCTCGCCATGCTCATGGGGCCTCACACAAACATTGATCATGGATTGTTTGCCGTTCTCGGCGCAGCCTCGCTTATGGCCGGTTCCATGAGGATGACTGTCTCACTCTGTGTCATCTTTCTCGAATTAACCAACAACCTTCTTTTACTCCCAATCACCATGTTTGTTCTCTTGATAGCCAAAACAGTTGGGGACAGTTTCAACCCAAGCATCTATGAGATCATTCTGCACCTTAAAGGCCTCCCTTTCATGGATTCAAACCCGGAGCCATGGATGAGGAACCTAACAGTGGGAGAGCTTGTTGATGTGAAGCCAGCAGTGGTTACTCTCCGAGGGGTAGAGAAAGTCTGCAACATTGTTGAAGCGTTGAGGAACACTACTCATAACGGTTTCCCTGTGGTGGATGATGGGGTGGTGCCGCCGACGAGGCTTGTAACGGAAGCAAGAGAACTGCATGGAATGATCCTGAGAGCACATCTGATCCAAGTGCTGAAGAAGAGGTGGTTCTTGAAGGAGGCAAGGAGGAGAGAGGAATGGGAGGTGAGGGAGAAGTTTACATGGGTTGAGCTTGCAGAGAGAGAAGGGAAGATTGAAGAGGTGGCTATAACAAGAGATGAAATGGAGATGTATGTTGATCTTCATCCTCTTACTAACACAACTCCTTTTACCGTTTTGGAGAGTATGTCAGTTGCAAAAGCCATGGTTCTCTTCAGGCAAGTTGGACTACGACATCTTCTTGTTGTACCCAAGTATCAAGCATCCGGGGTATCTCCTGTAATTGGAATATTGACAAGGCAGGATCTACTAGCACACAATATATTGTCAGTGTTTCCTCATCTTGCAAAATCAAAAAAGAGGAACTGA 2355 0.4654 MGDESNCSMNMEDEVQGVEERDPESNTNTNPLHEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRTRSRAQVLQYIFLKWSLAFLVGLLTGVIATLINLAIENIAGYKLLAVVQYIHKERYMAGFLYFTGVNFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVILRAFIELCHEGKCGLFGEGGLIMFDVSNVSVRYHVMDIIPVALIGVIGGVLGSLYNHVLHKVLRLYNLINQKGKIYKLLLSLSVALFTSACQYGLPFLAKCSPCDPSLPKSICPTNGRSGNYKQFNCPDGHYNDLATLLLTTNDDAVRNIFSSNTPNEYHPSSILIFFALYCILGLVTFGIAVPSGLFLPIILMGSGYGRLLAMLMGPHTNIDHGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNPSIYEIILHLKGLPFMDSNPEPWMRNLTVGELVDVKPAVVTLRGVEKVCNIVEALRNTTHNGFPVVDDGVVPPTRLVTEARELHGMILRAHLIQVLKKRWFLKEARRREEWEVREKFTWVELAEREGKIEEVAITRDEMEMYVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILSVFPHLAKSKKRN* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2959 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 768 - -
Ahy20g2959 784 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy20g2959 784 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy20g2959 784 PRINTS Plant CLC chloride channel signature 289 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy20g2959 784 PRINTS Plant CLC chloride channel signature 275 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy20g2959 784 PRINTS Plant CLC chloride channel signature 307 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy20g2959 784 SMART cbs_1 603 662 IPR000644 -
Ahy20g2959 784 SMART cbs_1 717 770 IPR000644 -
Ahy20g2959 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 782 - -
Ahy20g2959 784 SUPERFAMILY CBS-domain pair 584 767 IPR046342 -
Ahy20g2959 784 Pfam CBS domain 716 766 IPR000644 -
Ahy20g2959 784 Gene3D Clc chloride channel 82 583 - -
Ahy20g2959 784 SUPERFAMILY Clc chloride channel 68 583 IPR014743 -
Ahy20g2959 784 PANTHER CHLORIDE CHANNEL PROTEIN 8 782 - -
Ahy20g2959 784 Gene3D - 584 773 IPR046342 -
Ahy20g2959 784 CDD ClC_6_like 59 581 - -
Ahy20g2959 784 ProSiteProfiles CBS domain profile. 714 780 IPR000644 -
Ahy20g2959 784 PRINTS Chloride channel signature 159 176 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 PRINTS Chloride channel signature 254 273 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy20g2959 784 MobiDBLite consensus disorder prediction 1 34 - -
Ahy20g2959 784 Pfam Voltage gated chloride channel 147 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2959 Ahy-Chr20 140367035 140371288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2959 19 781 Ion Channels AT3G27170 79.554 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2959 K05016 - gmx:778094 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2959 20 140367035 140371288 Ahy10g2406 10 113606338 113611045 hybridization