Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2956 ATGCCGAAATCGAAGAGAAATAGACAAGTTACGCTTTCGAAAACGAAGAAAAAGGGAAGGGAACATAAAGAGGCAATTGTGAATTCCATAAAAGAGGCGGCTGAGAAATACTCTTCTGTTTATGTGTTCTCTTTTGAGAATATGAGGAATCAGAAGTTCAAGGAGTTCAGGGAGCAGCTCAAATCAAGTAGCAGATTCTTTTTGGGATCAAACAAAGTGATGCAGATTTCTCTTGGAAGGTCTCCTTCTGATGAAGTCAGATCAGGTCTTCATAAGGTTTCCAAGCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAACTTATCAAAAGAAGAAGTTGAAAAGCTTTTTAATCAATTTGAAGAATACGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTCGATCTTAAAGAGGGTCCTTTAGAGCAGTTTACGCATGAGATGGAACCCTTCCTTCGGAAGCAAGGCATGCCTGTCCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCAGATTTTGTTGTTTGCGAGGAAGGGAAGCCCTTGTCGCCCGAGGCAGCTCGGATACTGCGCTTGTTGGGAATCAAGATGGCTTCATTCCGGCTACACCTGATTTGCAGGTGGACTCCTGATGATTTTGAACTTTACATTGATGGGCCTGAAGATTCAGATGTTGAATGTTCATAG 690 0.4217 MPKSKRNRQVTLSKTKKKGREHKEAIVNSIKEAAEKYSSVYVFSFENMRNQKFKEFREQLKSSSRFFLGSNKVMQISLGRSPSDEVRSGLHKVSKLLRGDSGMFFTNLSKEEVEKLFNQFEEYDFARTGSIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEAARILRLLGIKMASFRLHLICRWTPDDFELYIDGPEDSDVECS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2956 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Ahy20g2956 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Ahy20g2956 229 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 228 - -
Ahy20g2956 229 Gene3D - 30 211 IPR043141 -
Ahy20g2956 229 MobiDBLite consensus disorder prediction 1 16 - -
Ahy20g2956 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Ahy20g2956 229 MobiDBLite consensus disorder prediction 1 23 - -
Ahy20g2956 229 Gene3D - 125 198 IPR043164 -
Ahy20g2956 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 228 - -
Ahy20g2956 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2956 Ahy-Chr20 140355676 140357663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2956 15 227 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.624 3.94e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2956 K14815 - gmx:100500064 420.239