Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2948 ATGGAACAAAAAACAGCTACCTCCAACAGCGTCTTAATTGACCCAAGCAACGGTTTCAACCGCGCTACCAGAACATTCCACAGCCTAAAACCCCCTCTCCGCCTCCCTCCTCCACATGCCACCGTCTCCGCACCATCATACGTTCTCTCTCTCCGTCGCAACTCACCTTGGTCCGACTCCGTCACCGCTCTCATCGACTCTGCCACCGGCCGCCACCTCTCCTACGCCGATTTCATCCGCCGTTCAGAAACCCTAGCTGCCAACCTTACATCCCTCTTCAAACTCTCCAAAAACGACACCGCTTTGGTCCTCTCTCCAAACCTCCTCCACGTTCCTATCCTCCACTTCGCGCTCCTCTCCCTCGGCGTCGTTGTTTCGCCGGCAAATCCGCTTGCCACGCGCTCCGATCTCACGCGCATCATCCGCCTTAGCAAACCTACCATCGCATTCGCCACGTCATCAGCGGCTAAGAACCTTCCCAATGAGTTCCGTCACGGGACCGTCCTCATCGACTCGCCCGAGTTCGATTCGCTCATGACAGCGAGTCGACCCGGCGCCAAACTCGAACAAGTGGAGGTGAGTCAGTCTGACGTGGCAGCTATTCTTTACTCTTCAGGAACCACAGGGAAGGTGAAGGGAGTGATGCTGACTCATCGGAACCTGATTGCAATGGCAGGGGTATACAATGTCGTTCGGGCGCAGAGGGAGAAGCCCGCCGTGTTCCTATATACGGTGCCGTTTTTCCACGTGTTCGGGTTTACGCTCTCGCTGAGGGCGGTGGTGCTATTGGAAACGGTGGTGTTAATGGAGAGATTCGGGTTGAGGAGGATGATGGAGGCGATAGAGAGGTTTCGAGTTACGCACATGGCGGCGGTGCCGTCAGTAATGGTAGCGATGATGAAAGACGACTTGACGGCGGCTTATGATTTAAGGTCGTTGGAATGCGTCGCTTGCGGCGGGGCTCCTCTCGGAAAGGATACCGCCGCGGCGTTCAAAACAAAGTTTCCCAAAGTGTTAATCTTGCAGGAAATATTGCAGGGATACGGTCTAACGGAGTCAACAGCAGGGGTTGCCCGAACAACGAATCCGGAGGAGGCAAGCCGATCAAGGACAACAGGTAAGCTGGTGTCAGGTGTTGAGGCTAAAATTGTAAATCCAGACACAGGGGAGCCCATGTTTCCTGGTGATCAAGGGGAACTTTGGCTCAGAGGACCTTCAATTATGAAAGGTTATGTTGGTGACCCAGAAGCAACTTTAGCAAGCTTGGTGAATGGGTGGTTAAGGACTGGGGACCTCTGCTATTTCGATGAAGAGGGTTTCCTCTATGTCGTTGACAGGTTGAAAGAGTTGATCAAATATAAAGGCTACCAGGTGGCCCCTGCAGAATTAGAACAAGTGCTCCATTCGCACCCTGAGATAAGCGATGCGGCAGTTATTCCATATCCTGATGAAGAAGCTGGTCAAGTCCCCATGGCCTTTGTGGTAAGAAAGCCCCAAAGTTCCCTTGGTGAAGCAGAAATAATTGAATTTGTTGCTAAACAGGTTGCACCATACAAGAAAATAAGACGTGTAACATTTGTTGACTCCATACCAAAGAATGCAGTGGGGAAAATTCTAAGGAAAGATTTAAATAAAATTGCCCTTGAAAGACATATCTCTAGGCTATAA 1668 0.515 MEQKTATSNSVLIDPSNGFNRATRTFHSLKPPLRLPPPHATVSAPSYVLSLRRNSPWSDSVTALIDSATGRHLSYADFIRRSETLAANLTSLFKLSKNDTALVLSPNLLHVPILHFALLSLGVVVSPANPLATRSDLTRIIRLSKPTIAFATSSAAKNLPNEFRHGTVLIDSPEFDSLMTASRPGAKLEQVEVSQSDVAAILYSSGTTGKVKGVMLTHRNLIAMAGVYNVVRAQREKPAVFLYTVPFFHVFGFTLSLRAVVLLETVVLMERFGLRRMMEAIERFRVTHMAAVPSVMVAMMKDDLTAAYDLRSLECVACGGAPLGKDTAAAFKTKFPKVLILQEILQGYGLTESTAGVARTTNPEEASRSRTTGKLVSGVEAKIVNPDTGEPMFPGDQGELWLRGPSIMKGYVGDPEATLASLVNGWLRTGDLCYFDEEGFLYVVDRLKELIKYKGYQVAPAELEQVLHSHPEISDAAVIPYPDEEAGQVPMAFVVRKPQSSLGEAEIIEFVAKQVAPYKKIRRVTFVDSIPKNAVGKILRKDLNKIALERHISRL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2948 555 CDD 4CL 45 543 - -
Ahy20g2948 555 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
Ahy20g2948 555 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 14 547 - -
Ahy20g2948 555 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 547 - -
Ahy20g2948 555 Pfam AMP-binding enzyme 61 453 IPR000873 -
Ahy20g2948 555 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Ahy20g2948 555 Gene3D - 38 448 IPR042099 -
Ahy20g2948 555 SUPERFAMILY Acetyl-CoA synthetase-like 58 549 - -
Ahy20g2948 555 Gene3D - 449 551 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2948 Ahy-Chr20 140290926 140296649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2948 5 555 Monolignol Biosynthesis Gene Families AT5G63380 52.128 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2948 - - gmx:100801143 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2948 20 140290926 140296649 Ahy10g2398 10 113538774 113544647 hybridization