Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2911 ATGATTAGTTGTCTCTATGCCATTGAATGGAGATGCATGTGGACTCAGATTTCGTTTTCCCTCCATTTCCATCCTCAACTTGAATTAAAAAAATGTGGAAAAATACAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCTTATAGTTGAGGGTCAGGTTTATAGAATGGCATACTTTACTGTTGTTTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGATTTGCTGAATATGACCGAAGATTATGATTTTTTAGTTGATATTATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAAAATATGCAAAAGAGGGCAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCCAAAGATCTTACCTTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCGTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAGGTTGTTGATTTCAGGCATAGTATGATTGAGCAAGGGGTGAATGGTACTCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTGTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACCATTGAAGAGCTTCAAGATAAGAATCAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAGAATGGTGTATATTACTGTGATTTCTCTTTGAAGCACATAACCAATGTCACTCCAAGATTTAAAGTTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTAGTGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATTTTCCAAGGGCTCATTGGAAAGAAGTTACTGCTTAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTACCATATTTGAACTTCCCAATTATGATGCTGATGACGAGTTTACTCCAAAAAAGGAGCCTGATTTACACAAATCTGTCCTGTTTGGAAAAGGGGATACTGGTATTAAGGAGGAGTCATCAAAGACTTGTATCAAAAGTGAAAAAGTTGATGGGTCTGAGTTTTCTGCGTTAGTTAATGGTGAAGATGGGAAAGATGAGAAAACACCCACCAATGATACTGTTAGTGATGATCTTTCTACTGAACTGAATATATTGCTTAGCTCACCAGAAAAGGAAACTCAGGATGTGCTGTCCCATGTTCTCCATGCACGTTGCCAATATGGAGAAAAGGTGGCTCATGACAATGATGTTGTCACCTCCAAGGGCAAGAGGAATTTGAATCCCCAATTTGAAGAAGCGGCTACTCTTGCAGATGAGCGTGGGTCCAAGGTTGCCAAGGTTAATGGGGTGTGA 1683 0.3874 MISCLYAIEWRCMWTQISFSLHFHPQLELKKCGKIQATVKKPLLNRFRDLIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSDLLNMTEDYDFLVDIIGLLTSVGEEKKYAKEGKIVKMIVLELTSKDLTLRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDLPEVVDFRHSMIEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDKNQEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGVYYCDFSLKHITNVTPRFKVKITVEDHSGEGIFLLFDREASYLLKKSCADLFSEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIITIFELPNYDADDEFTPKKEPDLHKSVLFGKGDTGIKEESSKTCIKSEKVDGSEFSALVNGEDGKDEKTPTNDTVSDDLSTELNILLSSPEKETQDVLSHVLHARCQYGEKVAHDNDVVTSKGKRNLNPQFEEAATLADERGSKVAKVNGV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2911 560 CDD RPA1_DBD_A_like 13 88 - -
Ahy20g2911 560 Pfam Replication factor-A C terminal domain 272 358 IPR013955 -
Ahy20g2911 560 PANTHER REPLICATION FACTOR A 1, RFA1 52 353 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g2911 560 SUPERFAMILY Nucleic acid-binding proteins 101 222 IPR012340 -
Ahy20g2911 560 Gene3D - 246 408 IPR012340 -
Ahy20g2911 560 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 52 353 - -
Ahy20g2911 560 Gene3D - 95 232 IPR012340 -
Ahy20g2911 560 Gene3D - 22 93 IPR012340 -
Ahy20g2911 560 SUPERFAMILY Nucleic acid-binding proteins 33 93 IPR012340 -
Ahy20g2911 560 CDD RPA1_DBD_B_like 121 224 - -
Ahy20g2911 560 Pfam Domain of unknown function DUF223 33 113 IPR003871 -
Ahy20g2911 560 CDD RPA1_DBD_C 258 401 IPR013955 -
Ahy20g2911 560 SUPERFAMILY Nucleic acid-binding proteins 255 406 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2911 Ahy-Chr20 139891662 139898569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2911 33 354 Core DNA Replication Machinery Family AT2G06510 23.167 2.64e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2911 - - adu:107471135 913.294