Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2908 ATGAGAAGGGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACATCTGTTGTTTCTGTGGTATCTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCATTAGATGAAATTGATCAAATGACAAAGGACCACAATTTCCTGATTGACTTTGTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGCTGGTGAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGCAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATTTGTTAGAATATGATAAGTTACAAAAATATGGAAGATCTCCCCTGGTTGTCCTCGAGTCTTTTAAAATCAAAGCCATTGAAGGTGGGGTAATCCTACAGAATGTGATAGATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGGCCGTTGAGTTCCTAAGCAAATTTAGTGTAGCCAGTTATGGATTCTCAAGCCTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATTCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTAGGACAATTAAGGAAGTCATGGATGAACCAGATTGGTGGTACTACACATGTGTGTGTGGTCAAGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGAATGTTATGGTCAAATATGGGATTCGGGTAAAGATTCAGGATGCTAGCTGTACTGTTTTGTTTGTTTTGCTTGATAATGCGGCAACAAAACTATTTGGAAGAACCTGTTCTGAAGCATTTCTTAGCATAGAAGATGAATTTCCAGTTGATCCTAGTGTGCTTGCAGTTTGTCGGTCATACTCTCCACAAATGTTTGATCATGTTGTTGGAGAGGAGAAAGTTTTCAAGGTTGAAATTGATTCTGCAGTTGATCCAGATTACTCCAGTTGCTTTAAAATTGTGAATGTCTTTAGTCATAATCAAGAACCAGTTGCAGTTGATGATTATATCAATGCAATGCTTCATGGTCCCATTTTTCCACCAATCTATGATAGCTACTTGCAGTATGCAACTGGCGAAGATTACAAGACTCAAGTAGTTTGTGATAATGCTATTCAATCAGAAACTATTGAAGATATTATCACTGATCTTATTTCACCGAACCGCTGTTATTCTGATTCTGAGAACGGTGGTTTTGTTTTTATTCTGGGAACTATATCATCTGTGTTGAAGAATCATAAGTGGTGGTTCTCAACTTGTTTATGTGGTTCTCTTGTGTCAACTAATAAAAATATTTTATCATGTGATCTATGTCAGCTTCAATGCATTGATGCTGTCCGAAGGTTCTGCTTGAAGGTTGTAGTGTCTCATTCAAATGGGAACAATATTTTTGTTCTTAAAGACCGTGAAGTCGTCCAAATAATAAAGACAAGATGCTCGAGTTTTTTGGATAATCACCCAAAGTTGAGTCAGGGATCTTATTGCAAAGTTGTTCCATTGAAACTCATTTCAAGTCTTTTGCACAAAAAAGTTGTGTTCATGGTTGATGCTAGGCCTGTGGGTTATGAGATGAATCGTTCTGTGTATATTGTTCAACAAATCTGGGATGATGCCTCTGTTATTAATGTTTTTAAGGCTGCTGCTGAGATGAATGACCATAAGATTCATGTTCTGGTTGATTCTATACCTGAAGTTGAGGATGTTTTCAGCCAATGTGGAAGTGATCATGAGGCCGTGGAGGATTTGCATGCTTTTTAG 1809 0.3781 MRRVTKHRFRLLFQYNTSVVSVVSPRIPHSGLCFASLDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYGRSPLVVLESFKIKAIEGGVILQNVIDVSRLFINPDIPEAVEFLSKFSVASYGFSSLVTNDLGYLVSKVDGDYFNSKEISNIQDLHSDNGDSHYFVIRTIKEVMDEPDWWYYTCVCGQAVVEHEDLYLCDACGSCVENVMVKYGIRVKIQDASCTVLFVLLDNAATKLFGRTCSEAFLSIEDEFPVDPSVLAVCRSYSPQMFDHVVGEEKVFKVEIDSAVDPDYSSCFKIVNVFSHNQEPVAVDDYINAMLHGPIFPPIYDSYLQYATGEDYKTQVVCDNAIQSETIEDIITDLISPNRCYSDSENGGFVFILGTISSVLKNHKWWFSTCLCGSLVSTNKNILSCDLCQLQCIDAVRRFCLKVVVSHSNGNNIFVLKDREVVQIIKTRCSSFLDNHPKLSQGSYCKVVPLKLISSLLHKKVVFMVDARPVGYEMNRSVYIVQQIWDDASVINVFKAAAEMNDHKIHVLVDSIPEVEDVFSQCGSDHEAVEDLHAF* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2908 602 CDD RPA1_DBD_B_like 52 150 - -
Ahy20g2908 602 SUPERFAMILY Nucleic acid-binding proteins 409 534 IPR012340 -
Ahy20g2908 602 Gene3D - 385 559 IPR012340 -
Ahy20g2908 602 Gene3D - 174 347 IPR012340 -
Ahy20g2908 602 Pfam Replication factor-A C terminal domain 201 282 IPR013955 -
Ahy20g2908 602 Gene3D - 26 160 IPR012340 -
Ahy20g2908 602 PANTHER REPLICATION FACTOR A 1, RFA1 12 278 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g2908 602 SUPERFAMILY Nucleic acid-binding proteins 181 339 IPR012340 -
Ahy20g2908 602 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 12 278 - -
Ahy20g2908 602 SUPERFAMILY Nucleic acid-binding proteins 34 156 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2908 Ahy-Chr20 139877800 139882593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2908 27 284 Core DNA Replication Machinery Family AT5G45400 20.213 7.31e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2908 - - ahf:112786912 1218.76