Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2907 ATGAGTCTTGCTATTGATGCTATTAGAAAAATCTCTCCATGGAAGGAAAGTTGGACTATTGAGGCTAAGATCTTGACCATTTGGGAAGATGCTACCATTGTTAATCAAAATGTGCAGAAACTCTTACACATGGTCTTGATGGATAAGCAGCACCACAAAATTCAAGCAACTATTGAGGATGATTTGATTTCAACTTTTATTGATCGGTTAAAAGAAGGAGAAGTATTCATTATTTCCGACTTCAAAGTGATACCCAATCTTGGATTGGTCAGGGTTACAAGACATCGTTTTCGCATCCTTTTCAAGTGTAGTACCTCTGTTGTTGCTGCTTCAAGTACAGTCATACCCAACCCTGGTTTAAGTGTAACTTCTATGGACCAGATTCTTCAGAAGTGCATTGATTATGAGTACTTAATAGATTTTATTGGGGTGCTTTGTGGATTGAAAAAGAGAAGGGATGTTGAGTGTAATGGAAAGATATTGAAAGTTCTGACCCTTGAAGTTTTTGCTGATGGGAAGAAAATCTCCTGCAATTTTGTTGGTGATTCTCCTGCTCTTTTAGAGATGAATACTTTGAAAAGGTACAAGAGACCACCTGTTGTAATTCTGCAATCTTTCAAGATCAAAGTCAATGGAGATAAAGTCAGTCTCCAAAATGTGATCAATATTTCCCGAGTTTTGATCAACCCTGATATGCAGGAAACTGTGAATTTTCTGAATCAATATGGTATTGGGAGCCACCATTTCAGTAGACTCTGTAGTAATGAGGTTGGGGATTTGGTATGTGTAAGGGATGATGAATCTTTTGATTGGAAGCTAATACGCACTATTGATAATCTTAAGGCCAACAATGAGGATGGACAATACTTTGTGGTTGGAAAAATTAAGGAGATTGTTGAAGATCCGGAGTGGTGGTTTTTTTCTTGTGTTTGCGGTCATCCTATTGTAGGTGATGACAATGTGTTCTATTGTCAGCTGTGCAGCAGAGAGATTCAGCATTTTATGATAAGTTACAGGATTAAGATACTTGTTGAAGACGGTACTTCTTGTGGAATGTTTGTCTTGTTAGACAGCCCAGCCACTAAGCTATTAGGGAGAACGTGTTCTGATGTTTTTTTGTTGTTAGAAGATGAAATCGATGATGTTAGTTCTGATTCGGCCTTTAGCCCAATATTTGAAGATTTTTCTCGGTATGGACAGCTTAGATGTTATGAGAACCAAGTCATATCTGGTGTTCGAATAGAGCTGCATAGCATTAAAGAGATTCTTGTTGACATTCTTTGTGCTAAGATGTATTCTTCTGCATCAAGAAATGTTAATAGCCAACTCACTCCTGCTGCTCCGGATAATCCCTGGCCATTCATGCTCTGTTTATCGCTCTCCCTGTCTCCCAAATTCTCATTTCCATAA 1410 0.3823 MSLAIDAIRKISPWKESWTIEAKILTIWEDATIVNQNVQKLLHMVLMDKQHHKIQATIEDDLISTFIDRLKEGEVFIISDFKVIPNLGLVRVTRHRFRILFKCSTSVVAASSTVIPNPGLSVTSMDQILQKCIDYEYLIDFIGVLCGLKKRRDVECNGKILKVLTLEVFADGKKISCNFVGDSPALLEMNTLKRYKRPPVVILQSFKIKVNGDKVSLQNVINISRVLINPDMQETVNFLNQYGIGSHHFSRLCSNEVGDLVCVRDDESFDWKLIRTIDNLKANNEDGQYFVVGKIKEIVEDPEWWFFSCVCGHPIVGDDNVFYCQLCSREIQHFMISYRIKILVEDGTSCGMFVLLDSPATKLLGRTCSDVFLLLEDEIDDVSSDSAFSPIFEDFSRYGQLRCYENQVISGVRIELHSIKEILVDILCAKMYSSASRNVNSQLTPAAPDNPWPFMLCLSLSLSPKFSFP* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2907 469 SUPERFAMILY Nucleic acid-binding proteins 121 247 IPR012340 -
Ahy20g2907 469 PANTHER REPLICATION FACTOR A 1, RFA1 40 362 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g2907 469 Gene3D - 114 248 IPR012340 -
Ahy20g2907 469 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Ahy20g2907 469 CDD RPA1_DBD_A_like 19 107 - -
Ahy20g2907 469 Gene3D - 264 419 IPR012340 -
Ahy20g2907 469 Gene3D - 4 111 IPR012340 -
Ahy20g2907 469 SUPERFAMILY Nucleic acid-binding proteins 270 389 IPR012340 -
Ahy20g2907 469 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 40 362 - -
Ahy20g2907 469 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2907 Ahy-Chr20 139871617 139874594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2907 1 378 Core DNA Replication Machinery Family AT5G08020 21.465 3.93e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2907 - - aip:107621285 914.835