Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2902 ATGAATGACCGTGTTGATCTGGTGGACAAAATCACTCCGTGGAGAAAATCATGGAAAGTGCATGTTAAAGTTGTCAAGTTGTGGTACCACAAGAATCCTGCTTTCGATTCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATAAGAAGTTACACAAGATCCAGGCCACCATTAGAGATCAGCTAATATCAAAATTTTCCTTGTCTCTAAATGAAGGAATTGTGTACTTGATGACCAATTTTACAGTTGTACCCAACACTGGTTTGAACAGGGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACATCTGTTGTTTCTGTGGTATCTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCATTAGATGAAATTGATCAAATGACAAAGGACCACAATTTCCTGATTGACTTTGTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGTTGGTGAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGCAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATTTGTTAGAATATGATAAGTTACAAAAATATGGAAGATCTCCCCTAGTTGTCCTCGAGTCTTTTAAAATCAAAGCCATTAAAGGTGGGGTAATCCTACAGAATGTGATAGATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGGCCGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGCCTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATTCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTCATGGATGAACCAGATTGGTGGTACTATACATGTGTGTGTGGTCAAGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGAATGTTATGGTCAAATATGGGATTCGGGTAAAGATTCAGGATGCTAGCTGTACTGTTTTGTTTCTTTTGCTTGATAATGCGGCAACAAAACTATTTGGAAGAACCTGTTCTGAAGCATTTCTTAGCATAGAAGATGAATTTCCAGTTGATCCTAGTGTGCTTGCAGTTTGTCGTTCATATTCTCCACAAATGTTTGATCATGTTGTTGGAGAGGAGAAAGGTTTCAAGGTTGAAATTGATTCTACAGTTGATCCAGATTACTCCAGTTGCTTTAAAATTGTGAATGCCTTTAGTCATAATCAAGAACCAGTTGCAGTTGATGATTATATCAATGCAATGCTTCATGGTCCCATTTTTCCACCAATCTATGATAGCTACTTGCAGTATGCAACTGGCGAAGATTACAAGACTCAAGTAGTTTGTGATAATGCTATTCAATCAGAAACTATTGAAGAAGGTTCTGCTTGA 1464 0.3798 MNDRVDLVDKITPWRKSWKVHVKVVKLWYHKNPAFDSSQNLLHMVLMDKKLHKIQATIRDQLISKFSLSLNEGIVYLMTNFTVVPNTGLNRVTKHRFRLLFQYNTSVVSVVSPRIPHSGLCFASLDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYGRSPLVVLESFKIKAIKGGVILQNVIDVSRLFINPDIPEAVEFLSRFSVASYGFSSLVTNDLGYLVSKVDGDYFNSKEISNIQDLHSDNGDSHYFVIGTIKEVMDEPDWWYYTCVCGQAVVEHEDLYLCDACGSCVENVMVKYGIRVKIQDASCTVLFLLLDNAATKLFGRTCSEAFLSIEDEFPVDPSVLAVCRSYSPQMFDHVVGEEKGFKVEIDSTVDPDYSSCFKIVNAFSHNQEPVAVDDYINAMLHGPIFPPIYDSYLQYATGEDYKTQVVCDNAIQSETIEEGSA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2902 487 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Ahy20g2902 487 Pfam Domain of unknown function DUF223 44 112 IPR003871 -
Ahy20g2902 487 PANTHER REPLICATION FACTOR A 1, RFA1 21 366 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g2902 487 SUPERFAMILY Nucleic acid-binding proteins 269 415 IPR012340 -
Ahy20g2902 487 Gene3D - 114 248 IPR012340 -
Ahy20g2902 487 Gene3D - 7 111 IPR012340 -
Ahy20g2902 487 CDD RPA1_DBD_A_like 19 107 - -
Ahy20g2902 487 Pfam Replication factor-A C terminal domain 291 370 IPR013955 -
Ahy20g2902 487 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 21 366 - -
Ahy20g2902 487 CDD RPA1_DBD_B_like 140 242 - -
Ahy20g2902 487 Gene3D - 262 436 IPR012340 -
Ahy20g2902 487 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2902 Ahy-Chr20 139841929 139846721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2902 1 368 Core DNA Replication Machinery Family AT5G08020 22.081 2.10e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2902 - - aip:110268227 981.859