Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2867 ATGTTTCCTTCCACTACTTACAGTTACAGCACTGGCCCTTACCCTTGCTTCCCTTCATCTTCTTCTTCATATCCTCTTTTTCCTTTTCTGAACCCTGAGAACAATGCTTCTTCTTCTTCTGCAACAACCGCCACTAACAACAACAACAATAATCTCCTTCATGATCCATCTCTCTGCGTTCCTTACATTCCAATCCCTGAAGCACTAACCAATTTGGCAACAGTTGTAGATAACACTAGTAATCTTGCTGCATCTTCATCAATGCCCAAACAACACGACCTCAACGGTGGCGGTGGCGGAGGTGCTCATCATCACTTCGGCATATCCAGTTTGCTCGCGAAGAAACCGGCGGCGGCGAAGAAAGATAGGCACAGCAAGATTTACACCGCTCAAGGGCTGAGGGACCGAAGGGTGAGGCTGTCGATCGAGATCGCGCGCAAGTTCTTCGATCTCCAAGACATGCTAGGGTTTGATAAGGCCAGCAACACGCTCGACTGGCTCTTCACCAAGTCCAAGAAAGCCATTAAGGAGCTTGCCAGGAGCAAGAACCACAGCGCCAGTGACGAAGCCGAAGCCGGTGCCGGTGCCGGTGCCAATAACAAGAGTTTCGCCTCGTCCTCTGACTGCGACGAAGATGACTTTGAAGTGCTTTCTAGAAACAACCACCACCGCCACCATCAACAAGGGTCAGATGCGAGGGAGAGGAAGCTGAAAAGTGCACAACAGAAAGAAGCAAGTGCTTGTAATGTGAGGGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGAGAAAGGACTAGTAACAAGATGTGTAACAGCATAATGGGAAATTCTTCTTCTTCTTCCGGGAAGGTTCTAGAATTGAAGAAAAGATGCCCTGCACCTAGTGAAAACCCTCACCACCTTGGTGGTGGCGAAGTTTCACAAACTAGAGATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGGAAGTTGAAGCAGCCATCTATGATGTCATCCTCGCATCACCATCACCATCACCACCACCAATTAAACCTTCCCATCCCTAATAATAATAATAAGGAAGCAAGTTTCAACAACAACAGTGATAATAATTACCATCCTGGAAACTACACCAATTTGTCACCAAATTGGGATAATGCTAATGGACCAGCCTCATCAGCTAATAACCGCTCCAACTTCTGTGCAATAGCCAGCATGAATCTCTCTACAGGGCTACAAATCTTTGGAAAGTCATGGGAGGAATGCACCAATCCATCACGTCTGCACTAG 1287 0.4693 MFPSTTYSYSTGPYPCFPSSSSSYPLFPFLNPENNASSSSATTATNNNNNNLLHDPSLCVPYIPIPEALTNLATVVDNTSNLAASSSMPKQHDLNGGGGGGAHHHFGISSLLAKKPAAAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSKNHSASDEAEAGAGAGANNKSFASSSDCDEDDFEVLSRNNHHRHHQQGSDARERKLKSAQQKEASACNVRAKMKESREKARARARERTSNKMCNSIMGNSSSSSGKVLELKKRCPAPSENPHHLGGGEVSQTRDDFNVIEESIVIKRKLKQPSMMSSSHHHHHHHHQLNLPIPNNNNKEASFNNNSDNNYHPGNYTNLSPNWDNANGPASSANNRSNFCAIASMNLSTGLQIFGKSWEECTNPSRLH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2867 428 ProSiteProfiles TCP domain profile. 120 178 IPR017887 -
Ahy20g2867 428 ProSiteProfiles R domain profile. 255 272 IPR017888 -
Ahy20g2867 428 MobiDBLite consensus disorder prediction 365 391 - -
Ahy20g2867 428 MobiDBLite consensus disorder prediction 220 241 - -
Ahy20g2867 428 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 426 IPR005333 GO:0003700
Ahy20g2867 428 MobiDBLite consensus disorder prediction 249 269 - -
Ahy20g2867 428 MobiDBLite consensus disorder prediction 181 206 - -
Ahy20g2867 428 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 23 426 - -
Ahy20g2867 428 MobiDBLite consensus disorder prediction 220 269 - -
Ahy20g2867 428 Pfam TCP family transcription factor 119 275 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2867 Ahy-Chr20 139422771 139425102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2867 118 274 TCP Transcription Factor Family AT1G67260 44.586 1.04e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy20g2867 TCP 3.00E-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2867 - - gmx:100801549 319.701