Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2848 ATGGAAGCACAAACGATTCACCATCAATCTCACGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCGTTTCAGATGCCTGGCTTCCGAGAAAAGCTTTAGCTTCTCCTGTTCAAGGAATGGATCGTGTGGTGGCAACGGTGAGCGGCTACCATGGCTCCGAGCGGTTCAATCTCATCAGGCTGATTTCACATGCCGGCGCCAATTACGTTGGGTCAATGTCGAAATCGATCACGCATCTGATTTGTTGGAAGTTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAATCATCGGTGGATTGAAGACTGCATTAAAGAAGGAAGGCGCGTGCCAGAAGAGTCATATATCTTGCAAAGTGGATATGAAGTTGGGCCATTGTTACTGGAAGTTCCAATCAGTGTTCCAGCAACTAGATTGACAAAAAATAAAGTTATAACTCATCAAATATATGATATTGACTCTGGAGAGCAAACAACTGAGATCAGTTTTGGAGCTTCGGAAAATTCTGTTTGGGAAGATTTAAATACAAAGCATGACAAGTCCATTGCTTATCCTTCTAGACGGTCAAGGAAAGGAAAAAGAAGTATCTGTGCTGGTAATGGAGGTTGTACTGTGGCTGAACCTTCTCCTAAAGGCAGAAGGATTGTAAACAATATTGTTGATGAAGTGGTGTTGGACCCTTTATTGGATGTGGTCCCGGACAACCACCATAATAGATGGGATAGACGAAACCATGATGCTGCAGCTACCACTAGCCTTTGTAGTGGTGTCAATAAGGGAAATACAATTGAAAATGGAGAAACAACAGATGCCGGATTGTCTACTCAAAATGAAACTATCAATGGAACTTCAGATAGCATTGAAGAGATCGATCATTCGAACAATGTATCAGCTCTTAGAAGTTCAACTTTCTCTGTAGAGTATCACCTACCTATGACGCAAATGTCGACAGATACATGTTCTTCTGCTGAAAAGTTCACAGATGATTGTCAGGATGAACATGTTGCTGGCTTACCTACATCCAGTGAGTTATCCTGTGTTATCTGTCACGCAGATTTCAGCGCAACAAGGGGAATTCTTCCATGTGGACATCGATTTTGTTTTGAATGCATTCATAGTTGGGCTAATCATAGGACTTCAACGAGGAAAAATGCAACCTGTCCTTTGTGCAAGGCAAGTTTTCAGTCGATCAAGAAGGTTGAGCATGCAGATAAAATTGATCAAAAAGTATACACCCAGACAGTCCCATGTCACAATTCAGCTGAAGATGTTTTTATCGCTCCACATCAAGGATTTCCCGATTACCCTTTTGAGTCCTCAGTGGCAAACTCTTGTGTAGTTTGTGGTGGTCTGGAACCAGAGGATCTCCTTGACAGGTGTGATATTTGCCAAACTCGAAGAATCCATATCTATTGCCTGGACCCTCCTATAACTCCATGGATATGCAATCCCTGCAACCAACTACGGAGAAGTTACTATGATCGCTCGTATTAA 1527 0.4237 MEAQTIHHQSHGLSLSLSLSLALSLSLVSDAWLPRKALASPVQGMDRVVATVSGYHGSERFNLIRLISHAGANYVGSMSKSITHLICWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGYEVGPLLLEVPISVPATRLTKNKVITHQIYDIDSGEQTTEISFGASENSVWEDLNTKHDKSIAYPSRRSRKGKRSICAGNGGCTVAEPSPKGRRIVNNIVDEVVLDPLLDVVPDNHHNRWDRRNHDAAATTSLCSGVNKGNTIENGETTDAGLSTQNETINGTSDSIEEIDHSNNVSALRSSTFSVEYHLPMTQMSTDTCSSAEKFTDDCQDEHVAGLPTSSELSCVICHADFSATRGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADKIDQKVYTQTVPCHNSAEDVFIAPHQGFPDYPFESSVANSCVVCGGLEPEDLLDRCDICQTRRIHIYCLDPPITPWICNPCNQLRRSYYDRSY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2848 508 SUPERFAMILY FYVE/PHD zinc finger 445 499 IPR011011 -
Ahy20g2848 508 SUPERFAMILY BRCT domain 34 129 IPR036420 -
Ahy20g2848 508 Pfam twin BRCT domain 48 110 IPR001357 -
Ahy20g2848 508 ProSiteProfiles BRCT domain profile. 37 128 IPR001357 -
Ahy20g2848 508 PANTHER F5A8.9 PROTEIN 180 505 - -
Ahy20g2848 508 PANTHER F5A8.9 PROTEIN 41 182 - -
Ahy20g2848 508 SMART BRCT_7 42 118 IPR001357 -
Ahy20g2848 508 Gene3D BRCT domain 42 127 IPR036420 -
Ahy20g2848 508 ProSiteProfiles Zinc finger RING-type profile. 357 402 IPR001841 -
Ahy20g2848 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 439 IPR013083 -
Ahy20g2848 508 Pfam Ring finger domain 356 402 IPR001841 -
Ahy20g2848 508 SMART ring_2 357 401 IPR001841 -
Ahy20g2848 508 CDD RING-HC 357 401 - -
Ahy20g2848 508 SUPERFAMILY RING/U-box 350 408 - -
Ahy20g2848 508 ProSitePatterns Zinc finger RING-type signature. 373 382 IPR017907 -
Ahy20g2848 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 507 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2848 Ahy-Chr20 139195090 139200249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2848 82 134 Core DNA Replication Machinery Family AT4G02110 55.556 5.85e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2848 - - aip:107621679 764.607