Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2832 ATGGATATTATTCTTTGTTTCTGTTTCAGAAAAAGAAAAAAAAAAAAAAAATCTTTTTTTAACATATCAAAGGCACACTCCCGAAGTCCCGAACGGAAGACACACTTGTTTGCGTACTGCTTCTGCCTCAGTTCCTTCCTCTGCAACCACCTCTCCAGTCCTCTCTCTCTTTCTCTCTCACTCTGCTTCACGTCTCCCTGCCGCCAGCACCTCTCGTCCGCTGCCACCGTCGCCATCTTCCTGCAGGATTCAGACTACAAGGACAGTTTAAGTTCTACACTGGATACCAATATCTTGATAAATTATAATCATCCTAATTTTTTTAGATTTGGTTTAATTTTTAGGCTTTGCTGTAAGAAAGAAGGGAAGGAACAATTAATCATGGGTTGGGGTCACATTGGAAGAAATGGCAGTGACGAAGCTGGTCCTAGCAGCACCGTCCCCACAACCACCGAGCCACGGCGGTTCCCGCTGGCTGCTCAGCCGGAGATGATGCGTGCTGCTGAGAAGGACGAGCAGTATGCCTCTTTCGTCTATGAAGCCTGCCGCGACGCCTTCCGGCACCTCTTTGGTACAAGGGTTGCTGTTGCTTATCAAAACGAGACAAAACTCTTGGGACAAATGTTGTACTATGTTCTCACAACAGGATCAGGGCAGCAGACACTTGGGGAGGAGTACTGTGACATCACTCAGGTTGCTGGTCCTTATGGGCTGCCTCCTACCCCTGCAAGGCGTACTCTTTACATTGTATACCAGACAGCGATTCCTTATATTGCAGATCGTATTAGTTCACGAATTGCTTCCCGTGGCATTGCCCTCGCTGATTCAGAGTTTGCGGAGAGTTATGGTGATAGTGCTATCAGGAGCAGTAATTCACAGGATTCTGCGGCTAGTCCTTCAACATCAGGACAACATAGTACAACTCTTTCAAGATTGAAGCAAAAACTGAGTGGTTTTTGGTTGCATGTGGTTCAGCAATGGCCTGCGATGCTCCCTTTTGTGCGTGAATTGATACAGCTGGTTCTTCGTGCTAATCTAATGCTGTTCTACTTTGAAGGCCTTTATTATCATATATCCAAGCGTGCTGCAGGCATTCGTTATGTCTTCATTGGAAAACCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCGGAGCGGCTACGTCGAAGAAATTTATCTTCAATTGCTGGCTCAGTTCATCAGGCATCCTTTGCAACCCAACAGAGATCAGCAGGACATGGTTTGCCTGTTCTGAATGAAGAAGGTAATCTGGCATCTCTAGATACTGACGAAGGAGGTTGGGTCTTTGATTCTTCATCTTCTGAGTATGGAACTAGCAAATGCACTCTTTGCCTAAGTAATCGTCAACATCCAACAGCTACATCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAATGTCCTCTTTGCCGCACCCCAATAACACATTCAAGTCTAGTTTGTGTGTATCATTCAGACTTCTAG 1545 0.4524 MDIILCFCFRKRKKKKKSFFNISKAHSRSPERKTHLFAYCFCLSSFLCNHLSSPLSLSLSLCFTSPCRQHLSSAATVAIFLQDSDYKDSLSSTLDTNILINYNHPNFFRFGLIFRLCCKKEGKEQLIMGWGHIGRNGSDEAGPSSTVPTTTEPRRFPLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLYIVYQTAIPYIADRISSRIASRGIALADSEFAESYGDSAIRSSNSQDSAASPSTSGQHSTTLSRLKQKLSGFWLHVVQQWPAMLPFVRELIQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKPSNQRPRYQILGVFLLIQLCVIAAERLRRRNLSSIAGSVHQASFATQQRSAGHGLPVLNEEGNLASLDTDEGGWVFDSSSSEYGTSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2832 514 CDD RING-HC_PEX10 459 498 - -
Ahy20g2832 514 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 152 511 - -
Ahy20g2832 514 Pfam Zinc finger, C3HC4 type (RING finger) 458 503 - -
Ahy20g2832 514 PANTHER PEROXISOME BIOGENESIS FACTOR 10 152 511 - -
Ahy20g2832 514 ProSitePatterns Zinc finger RING-type signature. 475 484 IPR017907 -
Ahy20g2832 514 ProSiteProfiles Zinc finger RING-type profile. 460 498 IPR001841 -
Ahy20g2832 514 SMART ring_2 460 497 IPR001841 -
Ahy20g2832 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 511 IPR013083 -
Ahy20g2832 514 Pfam Pex2 / Pex12 amino terminal region 171 401 IPR006845 -
Ahy20g2832 514 SUPERFAMILY RING/U-box 453 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2832 Ahy-Chr20 138971007 138976816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2832 456 510 C3H Transcription Factor Family AT4G28270 32.394 9.56e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2832 K13346 - gmx:100783914 669.848