Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2801 ATGGTGATGCACCACAATTCCAAGAGGAGGTGGACTGTCACGGCCATATCCATCGAGGATGGCTACGTGGACGCATTTGCATTCATGAGTTTCCTGGATTTTGAACCATTCTCCAATAGAGAAAGTTGGAACTGGTTCATTCAGCGCCCTATAAATCAAGGCCTCGACAGCTGCCACAAGCGACTCGAGATTGTTTTACCAACTTGTTTTTCATCAGATGTTTCCAATAACCCACGGTTGTTGCGAAGGTTAGTTGAAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTCTTCTCCTTCAGCAAACATCGTTATCACCTGCTGTAGTCACATCTTCTGCCGAGTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCTCATTGTCCTCTTTGCCGTAGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAGAGCTGATAGTACCTCTACATCCTCATCATCGGATAAAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGGTTGTGTTTTCACAATTTCGCAAGGTGTTAGTGTTATTGAAAGTGACGTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTTGATGACGGCTGAACAGAGGGCTGGTGTTATTGATCAATTTCAAGACACTAAAGAAAATGGACCGACTGTTCTGCTTGCAGGCCTTAGGGTTTCAGGTGCAGATGTAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGGTGGAATGCGGCTGTCAAGGAACAGGCAATGGATCGCGTCCATTGCATCGGAAAGAAAGAGGCTGTGAGGATTGTTAGATTGGTTGTTTGGGACAGCATTGAGGAAAAGATGCTGATGTTGCAGGAGGAGAAGAGGGGAAGTCATTCTGGTAGCCTGAAGTATAAAGATCTGAAGTATAAAGATCTAAATTTCCTTATGTCCATAGAATGA 1017 0.4454 MVMHHNSKRRWTVTAISIEDGYVDAFAFMSFLDFEPFSNRESWNWFIQRPINQGLDSCHKRLEIVLPTCFSSDVSNNPRLLRRLVETLQECEAYECPICSSPSANIVITCCSHIFCRVCILRIIQSSGSPHCPLCRRALSESDLFSAPIEPSRADSTSTSSSSDKELSSKTSALIKFLKESREQKPTAKSVVFSQFRKVLVLLKVTLKEAGFKTLRIDGLMTAEQRAGVIDQFQDTKENGPTVLLAGLRVSGADVNLTAATTVYFMEPWWNAAVKEQAMDRVHCIGKKEAVRIVRLVVWDSIEEKMLMLQEEKRGSHSGSLKYKDLKYKDLNFLMSIE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2801 338 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 3 64 - -
Ahy20g2801 338 Pfam Zinc finger, C3HC4 type (RING finger) 93 140 - -
Ahy20g2801 338 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 173 329 IPR001650 -
Ahy20g2801 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 145 IPR013083 -
Ahy20g2801 338 ProSiteProfiles Zinc finger RING-type profile. 96 136 IPR001841 -
Ahy20g2801 338 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Ahy20g2801 338 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 79 320 - -
Ahy20g2801 338 SMART ring_2 96 135 IPR001841 -
Ahy20g2801 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 332 IPR027417 -
Ahy20g2801 338 SMART helicmild6 201 286 IPR001650 -
Ahy20g2801 338 Gene3D - 146 332 IPR027417 -
Ahy20g2801 338 CDD SF2_C_SNF 170 297 - -
Ahy20g2801 338 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 79 320 - -
Ahy20g2801 338 Pfam Helicase conserved C-terminal domain 170 284 IPR001650 -
Ahy20g2801 338 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 3 64 - -
Ahy20g2801 338 SUPERFAMILY RING/U-box 92 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2801 Ahy-Chr20 138500264 138502507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2801 7 68 RAD5 or RAD16-like Gene Family AT5G05130 41.935 1.12e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy20g2801 Helicase_C 1.30E-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2801 K15711 - gmx:100791783 285.804