Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2796 ATGAGTATCATGAAGTCATTGGATCACTGGAGGAGTTACTTCAGGTCTTGTTCATCTTCATCTGATATATTTGAAATAATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTGAGAAGGGACCATATTGCTGAGATGCTCTTCTCTTGCAAGCAAACAAGGTGCGTGGGTTGTGACAGGGTTGAGCTCTCTGTCCCTATTGATGGTGCTGATGGTGGTGGTGCTCGTGGTGGTGGTGATGATGATGATGGTGCCTACAAGAGCAGTGGTTTTCATCACAATCGGGATGGTGTTGTTGAGTTTGAAGCTGGAGCAAGCAAGGAGAGCAAGGTGAATAGCTCAAGGGGTGATATTGATGATCATGGTGACATGGATGTGAATAGGGTCCTTAGCAATTATAGCTTTGGTGAAGCTGAGGCATTGACGGATGAAATGGAAGAACAGTCTCAGTTTGTTGCTGAGGTCTTGAGGATCAGAGACATTCTCCATAACCGTCAGGAAGAGTCAGATGGAGTATTGTTTGACTCACTGAGGAGGCTGCAACTGATGGAACTCACTTTTGATTGTCTCAAGGCAACTGAGATTGGAAAGGCTGTTAATCCTCTTAGAAAGCATGCTTCAAAGGATATCCGTCAACTCGCACGAAAGCTTATTGATGATTGGAAAGAAATGGTAGATGAGTGGGTCAAGGCCACAGCTATTGCAGGATCAGAAGGCACTCCAGATTCTGTAAATCCATCAGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTTTGGACGAAGGCGCTTACTTGGTAGCTTCAACCGGTTCAATTGAACTCTCTCAGTTCTTTGATGGCATGGATGATATCGGAAATCCTCTACAAAGTGGGCAAGTCAGGAACCGAGAAAATGGCAGAAAGCCATCAATGGACATCCAAAATATGGAAAAGAGGAAACCACAGGCTTCAAATGACACTGCCAAGGATAGTAAGAGCCAGCTGGTTAAGAAAAATGAGCCCACAGTGAAGCCAAGTAGACCGGTAGCCGCTGATTCTGGTCCTGGCAGACCACCAAAGTCAAGCATGCAGCGAAAAAGCAATGTCGAGCCAAGAACAGAGAATGGTACAGTCACAAGGAAGCCTCCGGTTGACCAGCAAGATAAATCGAATTGCTCGGACGATGTGGATGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGTTCGATATCAAGAAGCCGAAAAAGCTAAGAGGCAACGAACTATACAAGTAATGGAATTGAATGATCTCCCAAAGCAAGGAGCCGGCCAGCGAAATCCTCAGTTCAAAGCCGGAAACCATAACCGGCACTGGGCCAACGGTCGAAGGTAG 1374 0.4622 MSIMKSLDHWRSYFRSCSSSSDIFEIIDHAIMVAASDCPKEFKLRRDHIAEMLFSCKQTRCVGCDRVELSVPIDGADGGGARGGGDDDDGAYKSSGFHHNRDGVVEFEAGASKESKVNSSRGDIDDHGDMDVNRVLSNYSFGEAEALTDEMEEQSQFVAEVLRIRDILHNRQEESDGVLFDSLRRLQLMELTFDCLKATEIGKAVNPLRKHASKDIRQLARKLIDDWKEMVDEWVKATAIAGSEGTPDSVNPSVVDEEEGLPSPPLDEGAYLVASTGSIELSQFFDGMDDIGNPLQSGQVRNRENGRKPSMDIQNMEKRKPQASNDTAKDSKSQLVKKNEPTVKPSRPVAADSGPGRPPKSSMQRKSNVEPRTENGTVTRKPPVDQQDKSNCSDDVDAKLEATKRKLQVRYQEAEKAKRQRTIQVMELNDLPKQGAGQRNPQFKAGNHNRHWANGRR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2796 457 ProSiteProfiles TFIIS N-terminal domain profile. 159 234 IPR017923 -
Ahy20g2796 457 MobiDBLite consensus disorder prediction 290 397 - -
Ahy20g2796 457 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 149 243 IPR035441 -
Ahy20g2796 457 MobiDBLite consensus disorder prediction 429 457 - -
Ahy20g2796 457 SMART TFS2_5 158 233 IPR003617 GO:0005634
Ahy20g2796 457 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 456 IPR044805 -
Ahy20g2796 457 Coils Coil 397 420 - -
Ahy20g2796 457 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 456 - -
Ahy20g2796 457 CDD TFIIS_I 159 232 - -
Ahy20g2796 457 MobiDBLite consensus disorder prediction 242 269 - -
Ahy20g2796 457 MobiDBLite consensus disorder prediction 322 337 - -
Ahy20g2796 457 MobiDBLite consensus disorder prediction 360 386 - -
Ahy20g2796 457 Pfam TFIIS helical bundle-like domain 183 231 IPR017923 -
Ahy20g2796 457 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 156 238 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2796 Ahy-Chr20 138413591 138417452 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy20g2796 Med26 4.30E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2796 - - gmx:100775579 568.155