Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2784 ATGAATGACCTTTTGGCTAGCAAATCCTTCGTCTCACGCAATGGCTCGCCGGACGACCATGTCATCGAAATCAACCCTGGCGCGGCGGGAGCCACCCTAGACCAATTCTTCGCCGACGTGGAGGCGACGAAAGATGAAATGAAGAATCTAGAGAACATTTTCCAGAGCCTCAAAAGCCTCAACGAAGAGAGCAAAACCCTTTACGACGCCACCGCCGTGAAGGACCTCCGTTCACGTATGGACGCTGACGTGGCACTTGCCCTCAAGAAAGCCAAGTTCATCAAGCTCAAGCTGGAGACCCTCGAAAGTTCCAACGCCTCCTCCCGCCGCGTCCCCACCTGTGGGCCTGGCTCCTCCTCCGACCGCACACGGATGTCCGTCGTGCATGGGCTGAAGATGAAGCTGAAGAACTTCATGGACGCCTTCAATGGGCTCAGGAACCAGATCTCGGCAGAGTATCGGGACACAGTACAGCGCCGGTATTTCACTATTACCGGCGAGAAACCCGATGAGAAGACCGTTGAGATATTGATCTCCACGGGTACAGAATGCTTAATTGTTTGTGGCAACGCTCTGCTTTTTAAAGCTCTTTTTGGTGAGAGTGAGTCACTTGTACAAAAAGCCATAGAAGAACATGGAAGGGGAAGAATAGTGGAGACATTGAAGGAGATAGAGGAGAGGCACGATGCAGTGAAAGAGATAGAGAGGAGGCTGATGGAGTTGCAGCAAGTGTTCTTGGACATGGCAGTGTTGGTGCAATCTCAAGGGGAACGACTTAATGACATCGAAAGCTTTGTCACAAAAGCTAACTCCTTCGTGGAGAGCGGTACTCGGCAGGTGGAGGTGGCGGTGAAGACCCAGAAGAGTACCCGCAAATGGACATGCTGTGCCATTATCCTTATTATTCTCATCATCTTCCTCCTCCTCTTTCTCCTCAAACCATGGCAACCTAATAAGGGAGCTCAACTCACCCATGTTGCTCCTAAAACTTTATAG 996 0.51 MNDLLASKSFVSRNGSPDDHVIEINPGAAGATLDQFFADVEATKDEMKNLENIFQSLKSLNEESKTLYDATAVKDLRSRMDADVALALKKAKFIKLKLETLESSNASSRRVPTCGPGSSSDRTRMSVVHGLKMKLKNFMDAFNGLRNQISAEYRDTVQRRYFTITGEKPDEKTVEILISTGTECLIVCGNALLFKALFGESESLVQKAIEEHGRGRIVETLKEIEERHDAVKEIERRLMELQQVFLDMAVLVQSQGERLNDIESFVTKANSFVESGTRQVEVAVKTQKSTRKWTCCAIILIILIIFLLLFLLKPWQPNKGAQLTHVAPKTL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2784 331 SMART SynN_4 28 154 IPR006011 GO:0016020
Ahy20g2784 331 CDD SNARE_syntaxin1-like 220 281 - -
Ahy20g2784 331 SUPERFAMILY t-snare proteins 32 276 IPR010989 GO:0016020|GO:0016192
Ahy20g2784 331 Pfam Syntaxin 199 256 IPR006011 GO:0016020
Ahy20g2784 331 Pfam Syntaxin 35 183 IPR006011 GO:0016020
Ahy20g2784 331 Gene3D - 217 313 - -
Ahy20g2784 331 SMART tSNARE_6 216 283 IPR000727 -
Ahy20g2784 331 PANTHER SYNTAXIN 199 310 IPR045242 -
Ahy20g2784 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 221 283 IPR000727 -
Ahy20g2784 331 Pfam SNARE domain 259 309 IPR000727 -
Ahy20g2784 331 PANTHER SYNTAXIN-121 199 310 - -
Ahy20g2784 331 Coils Coil 224 244 - -
Ahy20g2784 331 ProSitePatterns Syntaxin / epimorphin family signature. 227 266 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy20g2784 331 PANTHER SYNTAXIN-121 20 182 - -
Ahy20g2784 331 CDD SynN 33 184 IPR006011 GO:0016020
Ahy20g2784 331 Coils Coil 33 60 - -
Ahy20g2784 331 Gene3D - 33 160 - -
Ahy20g2784 331 PANTHER SYNTAXIN 20 182 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2784 Ahy-Chr20 138254657 138256628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2784 1 314 SNARE and Associated Proteins AT1G61290 54.232 1.91e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2784 K08486 - jre:108982862 346.28