Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2782 ATGGATAACGAGATCGACGTTCCTCCGTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAAGGATCCAGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACATGGCTCTTCTCCGCCAAGAACAACACCTGCCCCGTAACCAAGCAACAACTCTCTTCTTCTGATTTCTCCGATCTAACTCCAAACCACACTCTTCGCCGATTGATTCAGTCATGGTGTACCATCAACGCTTCCCACGGCATCCAAAGGATTCCCACACCTAAACCACCGGTCAACAGAAACCAGATCTCAAAGCTCCTCAAAGATGCTTCCCGTTCCACCACCGTCAACCAGATCAAGTGTCTCAGAAAGCTCAAATCCATTGCTTCTGGAAGCGAAACAAACAAAAGGTGCATGGAAGCTGCTGGTGCCGTTGACTTCTTGGCTTCCGTTGTCAACAACAACATCGATTGTTCTTCTTCTGATCATCACGACGACGACGATGATGATGAAGCTTTGAAGAATAGTCCCTCCGATGAAGCACTAAGCATGCTCTACAATCTTCATGTATCCGAAGCTGGATTGAAGAATCTCATAGGATTCAAGAACGGAGAGTTTGTGAATTCTCTAACGAGGATTTTGCAGAAAGGAACATACGATTCAAGAGCTTACGCAGTTTTCTTGCTGAAATCAATGTGTGAGGTGGCTGAACCGGTTCACCTTCTTCACTTAAGAACCGAGTTATTCGTGGAGCTAGTTCAGGTTTTGAAGGACCAGATTTCTCACAAGGCAACAAAAGCCGCCCTCCACGCTCTGATCCAGATCTCTTCGTGGGGGAGAAACAGGATCAGAGCGGCAGAGGCCGGCGCAGTTGCCGTTCTCGTGGAGCTTCTTCTCGAAACTAAAGAGAGGAAGCCCTGCGAGATGATGCTAGTTTTGTTAGAGGTGCTTTGCCAGTGTGCGGAGGGAAGAGCGGAGCTATTGAGCCATGGAGCGGGATTGGCCATTGTTTCCAAGAAGATTCTTAGGGTTTCGACGATGGCGAACGATAGGGCGGTGAGGATTCTTTTGTCCGTGGCGAAATTCTCCGCGACGCCGGTGGTTGTTCAAGAGATGCTGAAGCTTGGTGTGGTGGCGAAGCTGTGCTTGAGTCTTCAGGTGGATAGTGGAAGCAAGACGAAGGAGAAGGCGAGGGAGATTCTCAAGATTCATGCTAAGGCATGGAAGAATTCTCCATGCATACCTACCAATTTGGCTTCTGCATACCCGGCTTTTGCTTAA 1275 0.4886 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSAKNNTCPVTKQQLSSSDFSDLTPNHTLRRLIQSWCTINASHGIQRIPTPKPPVNRNQISKLLKDASRSTTVNQIKCLRKLKSIASGSETNKRCMEAAGAVDFLASVVNNNIDCSSSDHHDDDDDDEALKNSPSDEALSMLYNLHVSEAGLKNLIGFKNGEFVNSLTRILQKGTYDSRAYAVFLLKSMCEVAEPVHLLHLRTELFVELVQVLKDQISHKATKAALHALIQISSWGRNRIRAAEAGAVAVLVELLLETKERKPCEMMLVLLEVLCQCAEGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVAKFSATPVVVQEMLKLGVVAKLCLSLQVDSGSKTKEKAREILKIHAKAWKNSPCIPTNLASAYPAFA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2782 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 421 - -
Ahy20g2782 424 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Ahy20g2782 424 CDD RING-Ubox_PUB 11 54 IPR045210 -
Ahy20g2782 424 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Ahy20g2782 424 Gene3D - 96 411 IPR011989 -
Ahy20g2782 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Ahy20g2782 424 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Ahy20g2782 424 PANTHER WDSAM1 PROTEIN 3 421 IPR045185 GO:0061630
Ahy20g2782 424 SUPERFAMILY RING/U-box 4 84 - -
Ahy20g2782 424 SUPERFAMILY ARM repeat 101 389 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2782 Ahy-Chr20 138221399 138222989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2782 1 421 U-box Gene Family AT2G35930 57.647 7.25e-179 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2782 - - adu:107471540 779.245