Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2766 ATGGCTGCTGCTACAGCTTCTGTTTCCTCTTCTTCTTCTATCTGCAACAGAATCTACAACCCCACCTTCACCCACACTTCCATTTCACTCACCACCAACTTCCCTCAGAGACCCATCTCCTACAAACCCCTCACCTTCAACCTCAAGCCCCAAAGTTTCAATCTTTTCCCTCTCCCTCTTCACCCTTCCTCCGCTGCATTCGACGGATTCGAAGCCTCTCAAGAACAAGAACAAGAACAAGAACCACAACCAGAAGAGACCTCTGAAACACCCCAACAACAAGAAGAGCAAAGGGTTTCAGATTCCAACGACTCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATGACCTCCAACGAATTGTCCGAGCTCTTTGGAGAAGCTGGCACTGTTGTGTCTGTTGAGGTTGTGTACGATCGTGTCACGGATAGAAGTAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGGAGATGCTCAAGAAGCAATTCGAATGTTTGATGGCTCGCAAGTTGGCGGTAGGACCGTTAAGGTAAACTTCCCGGAAGTGCCCAAGGGAGGTGAAAGGTTGGTAATGGGGCCGAAAATTCGGAACAACTCCAGAGGCTTTGTAGACAGCCCTCACAAGCTCTATGCTGGAAACCTTGGTTGGAGACTGACTTCAGAGGGTCTTAGAGATGCCTTCGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGAGACTCCGGAAGATCACGAGGTTTTGGATTCGTTACTTTTCAAACTGCAGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGTGTGGAGATTGAAGGTCGACCTTTAAGGTTGAATTTGGCTGCAGAGAGAGCACCTTCATCTCCTCCAAGAAGTAATGTTGATAGCTCAGAGTTGTATTCTAGTGCCAGTACATGA 930 0.4774 MAAATASVSSSSSICNRIYNPTFTHTSISLTTNFPQRPISYKPLTFNLKPQSFNLFPLPLHPSSAAFDGFEASQEQEQEQEPQPEETSETPQQQEEQRVSDSNDSGRLYVGNLPYSMTSNELSELFGEAGTVVSVEVVYDRVTDRSRGFAFVTMGSVGDAQEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNSRGFVDSPHKLYAGNLGWRLTSEGLRDAFAEQPGLLSAKVIYERDSGRSRGFGFVTFQTAEDVEAALNAMNGVEIEGRPLRLNLAAERAPSSPPRSNVDSSELYSSAST* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2766 309 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 2 296 - -
Ahy20g2766 309 SUPERFAMILY RNA-binding domain, RBD 101 183 IPR035979 GO:0003676
Ahy20g2766 309 MobiDBLite consensus disorder prediction 293 309 - -
Ahy20g2766 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Ahy20g2766 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 281 IPR000504 GO:0003723
Ahy20g2766 309 Gene3D - 195 298 IPR012677 -
Ahy20g2766 309 SMART rrm1_1 210 283 IPR000504 GO:0003723
Ahy20g2766 309 SMART rrm1_1 107 180 IPR000504 GO:0003723
Ahy20g2766 309 MobiDBLite consensus disorder prediction 286 309 - -
Ahy20g2766 309 PANTHER OS02G0815200 PROTEIN 2 296 - -
Ahy20g2766 309 Gene3D - 64 190 IPR012677 -
Ahy20g2766 309 MobiDBLite consensus disorder prediction 85 111 - -
Ahy20g2766 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Ahy20g2766 309 SUPERFAMILY RNA-binding domain, RBD 206 296 IPR035979 GO:0003676
Ahy20g2766 309 MobiDBLite consensus disorder prediction 70 111 - -
Ahy20g2766 309 CDD RRM_HP0827_like 107 183 - -
Ahy20g2766 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2766 Ahy-Chr20 137974851 137976829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2766 106 304 Eukaryotic Initiation Factors Gene Family AT3G16380 28.643 1.53e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2766 - - adu:107471351 558.91