Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2763 ATGGATAACAATTGTCGTCCTAACCTGTTTTCCGTTCTCCGAAAAAGGAGGGTGTCATTTGCAGAGCTAGCAAGGCAATATGAGATGGCAGCCAACAACAATGATGACGATATCCCAAAAATGAAGAGGAGGATGAAACTACAACTGATAGATGATATGAATTCAAGAAAAGCTACATTCAGAAAGAGGCGTGCCGGGTTGTTGAAGAAGTTGGAGCAGCTCGCCATCCTTTATGACATTCAGGCTTGTATTGCCATCTTTAGTCCAGGGGACAAGAATCCTACGGTGTGGCCGTCGGTGGAGGAGGCTAAAGAGATCGTGGAGAAGTTTGAGGAGATTCCGGAGCCAGAGCGGTCGGGCAGAATGGTAACTCATCAGGAGTACAGGCAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATTAG 447 0.4609 MDNNCRPNLFSVLRKRRVSFAELARQYEMAANNNDDDIPKMKRRMKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILYDIQACIAIFSPGDKNPTVWPSVEEAKEIVEKFEEIPEPERSGRMVTHQEYRQQKVIWMEKQLEKLKKLND* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2763 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 92 IPR002100 GO:0003677|GO:0046983
Ahy20g2763 148 ProSiteProfiles MADS-box domain profile. 40 92 IPR002100 GO:0003677|GO:0046983
Ahy20g2763 148 PANTHER SERUM RESPONSE FACTOR HOMOLOG 42 145 - -
Ahy20g2763 148 CDD MADS_SRF_like 41 123 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy20g2763 148 Gene3D - 52 134 IPR036879 GO:0003677|GO:0046983
Ahy20g2763 148 SMART madsneu2 40 99 IPR002100 GO:0003677|GO:0046983
Ahy20g2763 148 PRINTS MADS domain signature 62 77 IPR002100 GO:0003677|GO:0046983
Ahy20g2763 148 PRINTS MADS domain signature 42 62 IPR002100 GO:0003677|GO:0046983
Ahy20g2763 148 SUPERFAMILY SRF-like 42 131 IPR036879 GO:0003677|GO:0046983
Ahy20g2763 148 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 42 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2763 Ahy-Chr20 137894148 137894945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2763 41 147 Type I MADS-box Gene Family AT1G31640 44.860 1.23e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy20g2763 SRF-TF 2.90E-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2763 - - aip:107621332 294.278