Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2721 ATGGGAAGGGGAAGAGTGGAACTGAAAAGAATAGAGAACAAGATAAACAGGCAGGTGACGTTTGCAAAGAGGAGGAATGGACTTCTCAAGAAAGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAACCGCGGAAAGCTTTATGAGTTTTGTAGCAGCAATAGCATGCTCAAAACACTTGAAAGGTACCAAAAATGTAGCTATGGTGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGCAGAACAGTTACCGTGAGTATCTAAAACTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAGAGGAACCTTCTTGGTGAAGACTTAGGTCCATTAGGCACCAAAGAGCTTGAGCAGCTTGAGCGTCAACTTGATACATCTCTCAGGCAAGTCAGGTCTACTAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTGCAAAACAAGGAACAGATTCTGGTGGAAGCAAACAGATCTTTAACCATGAAGCTGGAGGAAATCAATTCAAGAAACCAGTATCGGCAACCGTGGGAGGCCGGCGAACAAAGCATGCAATATGGTACACAGAATGCTCACTCTCAAGGCTTTTTCCAGCCTCTGGAATGCAATCCCACATTGCAGATAGGTCCTGATTACAGGTACAACCCTGTAGCTTCAGATCAGATAACGGCAACAACTCAGGCTCAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTGA 747 0.4391 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSNSMLKTLERYQKCSYGAVEVNKPAKELEQNSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKELEQLERQLDTSLRQVRSTKTQFMLDQLADLQNKEQILVEANRSLTMKLEEINSRNQYRQPWEAGEQSMQYGTQNAHSQGFFQPLECNPTLQIGPDYRYNPVASDQITATTQAQQVNGFVPGWML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2721 248 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g2721 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 PANTHER MADS BOX PROTEIN 1 233 - -
Ahy20g2721 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Ahy20g2721 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy20g2721 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 233 - -
Ahy20g2721 248 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Ahy20g2721 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy20g2721 248 Coils Coil 125 145 - -
Ahy20g2721 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2721 Ahy-Chr20 137224860 137232192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2721 1 248 MADS-box Gene Family AT5G15800 74.144 2.01e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g2721 K-box 1.80E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2721 K09264 - gmx:100785322 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2721 20 137224860 137232192 Ahy10g2203 10 110788249 110795529 hybridization
Ahy20g2721 20 137224860 137232192 Ahy14g3054 14 139311563 139316915 PCT
Ahy20g2721 20 137224860 137232192 Ahy4g2694 4 124950783 124956204 PCT
Ahy14g3054 14 139311563 139316915 Ahy20g2721 20 137224860 137232192 PCT
Ahy4g2694 4 124950783 124956204 Ahy20g2721 20 137224860 137232192 PCT