Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2707 ATGTTGTCTTCTTCCGTTGCCAAATTCCGATTCTTCATCAAACCGCCTCCATGCATTTTGCTCTTCTTCCTTCTGTCTTTCACTTCCTTCACTTCAACAGAAGCATATGATGTGCTTGATCCAAACGGAAATATTACAATCAGATGGGATATTATAAGCTGGACACCAGATGGTTATGTTGCTGTTGTTACATTAAACAATTTCCAGCAATACCGTCACATCTCGGCGCCAGGGTGGTCGCTAGGGTGGACATGGGCAAAGAAAGAGGTAATATGGAGCATGATGGGAGGGCAGACTACCGAACAAGGCGATTGCTCGAAATTCAAGACAACCCCACCACATTGCTGTAAAAAGGACCCAACCGTTGTAGATTTACTTCCTGGAACACCATACAATCAACAAATTGCAAATTGTTGCAAAGGAGGTGTACTCAGCTCATGGGGACAGGATCCGGCAAATGCCATTGCATCATTTCAAATCAGTGTTGGTAGAGCTGGAACCTCTAACAAAACAGTCAGGGTGCCCAAGAACTTCACCTTGAAAGCACCGGGACCGGGTTATACCTGTGGGCCGGGAAAAATTGTTCAACCTACTCAATTCTTAACAGGAGATAAAAGAAGAAGGACTCAAGCTCTCATGACATGGAATGTGACATGCATGTATTCACAATTTCTAGCTCAGAAAACTCCCAGTTGCTGTGTTTCACTCTCATCTTTCTATAATGATACCATTGTACCCTGCCCGACATGTTCGTGTGGCTGCCAGGGAAACTCTTCTCAATCCGGGAACTGTGTAGATCCAGATAAACCGCATTTGGCATCGGTTGTTGCTAACCCTGCAAAGAGTTCCCCTTTCGTTCAATGTACTCGCCATATGTGTCCTGTCCGAGTTCATTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTATTACTAATTTCAATTACAAGATGAACTATACAGATTGGAACTTGGTTATTCAACACCCGAATTTCGACAATTTGACTCAGCTTTTTAGTTTTAACTACAAGTCATTGACACCCTATGGCACAATAAATGATACAGCATTGCTATGGGGAATTAAGTTCTACAATGATTTGCTAATGGAAGCCGGTCCGGAAGGTAATGTACAATCAGAGCTACTCTTCCGAAAGGATAAATCAACTTTTACTTTCGACAAAGGTTGGGCGTTTCCTCGGAGGATCTATTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCGTGGCTGCCAAATGCCAGTTCCCGGCAAGAGGTTTCCTTGCTAGCTTTAGTGCTGGCTTCCTTTGTAGCCTTGGCATTGTGTGCATATGCTTAA 1359 0.4386 MLSSSVAKFRFFIKPPPCILLFFLLSFTSFTSTEAYDVLDPNGNITIRWDIISWTPDGYVAVVTLNNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKTTPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWGQDPANAIASFQISVGRAGTSNKTVRVPKNFTLKAPGPGYTCGPGKIVQPTQFLTGDKRRRTQALMTWNVTCMYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCSCGCQGNSSQSGNCVDPDKPHLASVVANPAKSSPFVQCTRHMCPVRVHWHVKLNYKEYWRVKVTITNFNYKMNYTDWNLVIQHPNFDNLTQLFSFNYKSLTPYGTINDTALLWGIKFYNDLLMEAGPEGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRQEVSLLALVLASFVALALCAYA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2707 452 PANTHER COBRA-LIKE PROTEIN 11 450 - -
Ahy20g2707 452 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Ahy20g2707 452 PIRSF COBRA 9 452 IPR006918 GO:0010215|GO:0031225
Ahy20g2707 452 PANTHER PROTEIN COBRA 11 450 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2707 Ahy-Chr20 137017631 137020918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2707 1 448 COBRA Gene Family AT3G02210 73.171 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2707 - - gmx:100783820 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2707 20 137017631 137020918 Ahy10g2192 10 110553231 110556504 hybridization
Ahy20g2707 20 137017631 137020918 Ahy14g3042 14 139184169 139187243 PCT
Ahy20g2707 20 137017631 137020918 Ahy4g2682 4 124825539 124828598 PCT
Ahy14g3043 14 139187131 139189793 Ahy20g2707 20 137017631 137020918 PCT
Ahy4g2683 4 124828705 124831164 Ahy20g2707 20 137017631 137020918 PCT