Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2652 ATGCCAAATCCAGTGAAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGGAAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGGCCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACAAGCAAAACAATGAAAAGTGCCATCAAAGCTAAAGATATAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATAAAAATTAAGCAAAAGCACCAAACAGGATCACCAGCAAATATTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCCTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGGTCCAGATCTTAAGGTTCATATTCGTCGAAGCCATGATTAG 831 0.4031 MPNPVKLQPPDGTEWRIDWTNRDGEILFGKGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMSALEIDYPSNGRIGDDNSVEILDEPPPRRGRGRPKKKVIAEPKQSRASTSKTMKSAIKAKDIDKNPNTQNLKLHVENEKDGQSEETADLKLPIIQRARPDMDVIREAKKFKSKNPSFVIKIKQKHQTGSPANIPVCFFRMYFENTKQYAILRVGKKQWHATLIYYPNRKNALISNWRLFLEENNLKAGDVCIFELINRQGPDLKVHIRRSHD* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2652 276 SMART B3_2 181 275 IPR003340 GO:0003677
Ahy20g2652 276 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Ahy20g2652 276 Gene3D - 1 66 IPR015300 -
Ahy20g2652 276 Pfam B3 DNA binding domain 196 274 IPR003340 GO:0003677
Ahy20g2652 276 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Ahy20g2652 276 SUPERFAMILY DNA-binding pseudobarrel domain 174 274 IPR015300 -
Ahy20g2652 276 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Ahy20g2652 276 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 274 - -
Ahy20g2652 276 Gene3D - 162 276 IPR015300 -
Ahy20g2652 276 PANTHER B3 DOMAIN-CONTAINING 2 274 - -
Ahy20g2652 276 ProSiteProfiles B3 DNA-binding domain profile. 220 275 IPR003340 GO:0003677
Ahy20g2652 276 MobiDBLite consensus disorder prediction 78 119 - -
Ahy20g2652 276 CDD B3_DNA 197 273 IPR003340 GO:0003677
Ahy20g2652 276 CDD B3_DNA 2 63 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2652 Ahy-Chr20 136007720 136009355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2652 5 276 B3 DNA Binding Superfamily AT3G18990 25.987 4.05e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g2652 B3 7.10E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2652 - - aip:107621185 534.258