Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2604 ATGGACCAGCTGGGAGATCGCATCCAATGTTCCATTAGGAATCCACAGCGGAGGCTGTTTGAGGATGAGTTGGTGGAGGGAAAAATATATACCATCTGCAACTTTTCAGTTGCCATTAATGATAAAAAATACAAGGCCACTAATCATGCTAGCAGGATTTACTTTAAGAGGGATACTCAACTTCGACTGGTTGATGATCCATCCTTTTCTGAGAATGTCTTCCGATTTGTTCCCAACGAAGTCATACTCAACCACACCAACGCTCAGTCGCATCTTATAGATGTCATTGGTCTTCTGACAGCCAAGGGTGACATAATTGAATTTACTAAAAATGGAAAGAAGAGCAACTACATCGTTCTGGAGCTTGACGACATGGGAAAAGGAAAAATTCGCTGTACACTTTGGGAGGAGTTCGCAAGTAAGTTGGTCAAACATATTCAAGAGCAGCTGACGTCTGAGTATATCCTAATTGTACAATTCGCTAAGTTCAATCTATTTAAAGGTACAATGGGGATATCAAACATCACCTATAATTCAAATCTTTACATCAATGCGGACTTTCAGGCGGTAAAGGATTTTCGTAAAAGTGTCATCATGTCCGGTGTTCCACCTCTAAATCAACTCTCCCAAATAACGACTGAACCTGTATACTCCATTGAGGAAGATCTCATTGACAAGTCAATATATAAATCCATTTCTGAGCTCAAGGAATGCATTGAGAATGGGAGCTTTGTTACAATTGGAACTGTTGTTGCAATCGATCCTAAGAACGGTTGGTGGTACAAAAGTTGCAAACATTGTTTCCATTCTCTGAAGGAGGCTGAGAACTCATACCACTGCGCTAAATGCGACACGTATCCCACCATTCACACTCCACGGTATAGCATTAATATTAAGGTTGTTGATGACACTGATTCGGCTGCATTTCTGCTGTATGACAAAGAAGCTTCCAAATTTCTTGGGATCTCAGCTTTTGATCTCAGACTTGCACAACTGACCAGGGGTGGCACCAATGAGGAATACCCGATAGAGCTTAATTCTTTTAGGGGGAAAAATTATCTTCAAAGTCTCCGTGAAGATGGAGGATCTTAA 1092 0.4103 MDQLGDRIQCSIRNPQRRLFEDELVEGKIYTICNFSVAINDKKYKATNHASRIYFKRDTQLRLVDDPSFSENVFRFVPNEVILNHTNAQSHLIDVIGLLTAKGDIIEFTKNGKKSNYIVLELDDMGKGKIRCTLWEEFASKLVKHIQEQLTSEYILIVQFAKFNLFKGTMGISNITYNSNLYINADFQAVKDFRKSVIMSGVPPLNQLSQITTEPVYSIEEDLIDKSIYKSISELKECIENGSFVTIGTVVAIDPKNGWWYKSCKHCFHSLKEAENSYHCAKCDTYPTIHTPRYSINIKVVDDTDSAAFLLYDKEASKFLGISAFDLRLAQLTRGGTNEEYPIELNSFRGKNYLQSLREDGGS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2604 363 Gene3D - 1 66 IPR012340 -
Ahy20g2604 363 SUPERFAMILY Nucleic acid-binding proteins 89 197 IPR012340 -
Ahy20g2604 363 Pfam Domain of unknown function DUF223 2 88 IPR003871 -
Ahy20g2604 363 PANTHER REPLICATION FACTOR A 1, RFA1 2 319 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g2604 363 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 2 319 - -
Ahy20g2604 363 CDD RPA1_DBD_B_like 94 198 - -
Ahy20g2604 363 Pfam Replication factor-A C terminal domain 245 331 IPR013955 -
Ahy20g2604 363 CDD RPA1_DBD_C 244 327 IPR013955 -
Ahy20g2604 363 Gene3D - 69 201 IPR012340 -
Ahy20g2604 363 SUPERFAMILY Nucleic acid-binding proteins 231 354 IPR012340 -
Ahy20g2604 363 Gene3D - 224 359 IPR012340 -
Ahy20g2604 363 CDD RPA1_DBD_A_like 1 59 - -
Ahy20g2604 363 SUPERFAMILY Nucleic acid-binding proteins 1 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2604 Ahy-Chr20 135126319 135132033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2604 2 339 Core DNA Replication Machinery Family AT5G08020 24.217 7.75e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2604 - - ahf:112707100 602.823