Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2590 ATGGCAAGGAAGAGAAAGAGCATTGAAGTAGTGGAAGAGGGGAACATAATTGAGGGAAGTTTGGGATGGGAGGAGATGGTGAAGCAAGCTGCAGTGCTTGGTGGAGCGAGGAGGGCGAGGAAGCGCTACGTTGGCGTCCGGCAGAGGCCGTCTGGAAGATGGGTGGCCGAGATTAAAGACACAATTCAGAAGATAAGAGTCTGGCTCGGAACCTTCGACACTGCAGAAGAAGCTGCCAGAGCTTATGACGAGGCGGCGTGCCTTCTTCGTGGCGCCAACACAAGAACAAACTTCTGGCCTTGTTCTCAATCCTCCACAAGCCCTGCTCTGTCTTCAAAGATCACAAATCTGCTCCTTCAAAGGCTTAAGGAAAGGAACAACACTTGTTCTGCTTCGAATTCTGTTCTTATCAATCAAGAAATTCAACAAGTGGAGGCATGCGGAGGGACTAATTCACCAGAATTCTCAATTGATCAATTCAATGACCTCCTCAATGAGGAAGATTACGGCGCAAGCAACACCGAATTCGTCGACAACGCTGCACGGATTGATTACATCACAAGCAGCTTTGAGTCTTGCTTGGCCGACAACAACAACAGCACGGATTACAAGCCGGCGAGCGACGACGACAGCGAAGGAGAAAGCTCGGATTTCGGCCTCCAAAGCTATGCAGATTTCGCGTTTCTTGACAACATCTCTGCGCCGCCGAGCAGCTATTACTCGCCGTTCGAGATGGCGCAGGAGATGGATGAAGCAGTGGAAGCAGAGAACTACGGCATACCTGAGTGCTTGAAGAGAATGAAGTATGAGAGAAAGTTCTCAGCTTCACTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGGAACATAAAGGGTAGAACCGGAATTTCCATGGCTGACCAATTGACAAGCCTTCAAATGGCTTGTAACAAAAACAAACAAGAGAAGAAGATTGATGATGACAAAGAAGAAGAAAATATTGATCAACCAATGCCAATTGACATGAATTCCTCTTCTTCTTCTTCGTCGTCGTCGTCAAGTATTGTTGATGCAGAACTCTTGTTTTGGAGCTCACTAGATCTTTCACCTATTTACACAAAATCTTTCCCCTATTTGAATTGTTAA 1143 0.4646 MARKRKSIEVVEEGNIIEGSLGWEEMVKQAAVLGGARRARKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNTCSASNSVLINQEIQQVEACGGTNSPEFSIDQFNDLLNEEDYGASNTEFVDNAARIDYITSSFESCLADNNNSTDYKPASDDDSEGESSDFGLQSYADFAFLDNISAPPSSYYSPFEMAQEMDEAVEAENYGIPECLKRMKYERKFSASLYAFNGIPECLKLKLESGNIKGRTGISMADQLTSLQMACNKNKQEKKIDDDKEEENIDQPMPIDMNSSSSSSSSSSSIVDAELLFWSSLDLSPIYTKSFPYLNC* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2590 380 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Ahy20g2590 380 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Ahy20g2590 380 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Ahy20g2590 380 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 312 - -
Ahy20g2590 380 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Ahy20g2590 380 MobiDBLite consensus disorder prediction 318 351 - -
Ahy20g2590 380 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Ahy20g2590 380 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Ahy20g2590 380 MobiDBLite consensus disorder prediction 337 351 - -
Ahy20g2590 380 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Ahy20g2590 380 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 312 - -
Ahy20g2590 380 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2590 Ahy-Chr20 134897320 134898790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2590 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 1.93e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g2590 AP2 2.90E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2590 K09286 - gmx:100786711 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2590 20 134897320 134898790 Ahy10g2105 10 109234072 109235428 hybridization