Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2568 ATGAATACAAAGATTGAACTGCCACCAGGTTTCAGGTTTCATCCAACAGATGAAGAGCTCATAACTCACTACCTCTCTCAGAAGGTTGTTGGTAGCTGCTTCTATGCAACTGCCATTATTGGAGAGGCTGATTTCAACAAGTGTGAGCCTTGGGATTTACCTTGTCAGACAAATAGAGCCACTGGCGCTGGGTACTGGAAGGCCACAGGGAAAGACAGAGAGATATACAATGCAAAAGCAAAAGCACTTATTGGGATGAAGAAAACACTTGTTTTCTACAAAGGAAGAGCTCCAAATGGTGAAAAGACAAATTGGGTCATGCATGAATATAGGTTGGAAGGCGATAATAAACCTTCTATATACAATCTACCCAAAGAAACCAAGAAAGAGTGGGCTTTGTGCAGAGTTCTACACAAAAGTGAAAAGAAAGTAATGCATGTTCCACAACCACAGGGATTGGTTGAGTTCAGCTCCTATGAAAATAAGGAACTTCCCCAATTAATGGATTCTTCACAAGTAACATTCTTTTCATCAGACCCAAATAATCAAAGTGAGGATCCAAATCCAATCACACGTGATGATGATAATAATAATGATGACATCATATTTGATAGCATTGAAACTCCTTTCTTGGAACAACAACCACCTTATTCTTCATCCTATGATTCTTCAGATTTAGACACCCTTAACCCTGCCACATGGGATATTTCCGAAAATGCCCCTACAAGTAATGCGTCTAAGGAGACGGACTTTGATGCTGACATGTTCTCTTTGATGTACAACAATAGAGAAGTGTTCCAAACATCATTTGAGAATCAGGAATATTATGCATATGATTCTGTAGGACATGTGGACAATGGTTCCCTATGGAATTTTTAG 879 0.3936 MNTKIELPPGFRFHPTDEELITHYLSQKVVGSCFYATAIIGEADFNKCEPWDLPCQTNRATGAGYWKATGKDREIYNAKAKALIGMKKTLVFYKGRAPNGEKTNWVMHEYRLEGDNKPSIYNLPKETKKEWALCRVLHKSEKKVMHVPQPQGLVEFSSYENKELPQLMDSSQVTFFSSDPNNQSEDPNPITRDDDNNNDDIIFDSIETPFLEQQPPYSSSYDSSDLDTLNPATWDISENAPTSNASKETDFDADMFSLMYNNREVFQTSFENQEYYAYDSVGHVDNGSLWNF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2568 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 56 254 - -
Ahy20g2568 292 SUPERFAMILY NAC domain 5 139 IPR036093 GO:0003677|GO:0006355
Ahy20g2568 292 Gene3D NAC domain 16 56 IPR036093 GO:0003677|GO:0006355
Ahy20g2568 292 Gene3D NAC domain 57 145 IPR036093 GO:0003677|GO:0006355
Ahy20g2568 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 4 54 - -
Ahy20g2568 292 MobiDBLite consensus disorder prediction 173 187 - -
Ahy20g2568 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 56 254 - -
Ahy20g2568 292 ProSiteProfiles NAC domain profile. 7 139 IPR003441 GO:0003677|GO:0006355
Ahy20g2568 292 MobiDBLite consensus disorder prediction 173 201 - -
Ahy20g2568 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 54 - -
Ahy20g2568 292 Pfam No apical meristem (NAM) protein 57 112 IPR003441 GO:0003677|GO:0006355
Ahy20g2568 292 Pfam No apical meristem (NAM) protein 8 56 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2568 Ahy-Chr20 134322597 134325326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2568 5 292 NAC Transcription Factor Family AT5G18270 41.515 4.20e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy20g2568 NAM 5.90E-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2568 - - ahf:112784292 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2568 20 134322597 134325326 Ahy20g2568 20 134322597 134325326 ECH