Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2547 ATGGCTCTTCTTGGGTTCCTTCTTCTGGTGTTTATCTCCATGCTCTCATATGTTAGTGCCTATGGATATGGTGGTTGGATCAATGCACATGCCACATTCTATGGTGGTAGTGATGCTTCTGGAACAATGGGTGGAGCTTGTGGATATGGAAACCTGTACAGCCAAGGGTATGGGACAAACACAGCAGCACTAAGCACAGCATTGTTCAACAATGGATTAAGCTGTGGAGCATGTTATGAAATAAGGTGTGCAAATGACCCACACTGGTGTTCCCCTGCCTCAATTGTAGTAACCGCCACTAACTTCTGCCCCCCTGGTGGTTGGTGTGACCCTCCAAATCACCATTTTGATCTCTCTCAGCCTGTTTTTCAGCAAATTGCTCAGTATAAAGCTGGCATTGTTCCTGTCATTTACAGAAGGGTGAGGTGCAAGAGAAGAGGGGGAATAAGGTTCACCATAAATGGCCACTCATACTTCAATTTAGTCCTAGTAACAAATGTTGGAGGTGCTGGTGATGTGCATGGTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACTTGAATGGACAAAGCCTTTCATTTTTAGTTACCACAAGTAATGGCCACAGTGTGGTATCTTACAATGTTGCCCCTCCAAGTTGGTCCTTTGGACAGACCTACACTGGAAGACAATTCCCTTAA 726 0.4504 MALLGFLLLVFISMLSYVSAYGYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIRCANDPHWCSPASIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVIYRRVRCKRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHSVVSYNVAPPSWSFGQTYTGRQFP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2547 241 Gene3D - 12 144 IPR036908 -
Ahy20g2547 241 Gene3D - 148 240 IPR036749 -
Ahy20g2547 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Ahy20g2547 241 SUPERFAMILY Barwin-like endoglucanases 25 166 IPR036908 -
Ahy20g2547 241 SMART dpbb_1 61 138 IPR007112 -
Ahy20g2547 241 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Ahy20g2547 241 PANTHER EXPANSIN 7 240 - -
Ahy20g2547 241 PANTHER EXPANSIN-A15 7 240 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Ahy20g2547 241 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Ahy20g2547 241 Pfam Lytic transglycolase 61 138 IPR009009 -
Ahy20g2547 241 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Ahy20g2547 241 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Ahy20g2547 241 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Ahy20g2547 241 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Ahy20g2547 241 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Ahy20g2547 241 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Ahy20g2547 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Ahy20g2547 241 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2547 Ahy-Chr20 133909401 133912168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2547 1 240 Expansin Gene Family AT2G03090 77.419 3.46e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2547 K20628 - gmx:100791784 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1918 11 124665604 124668075 Ahy20g2547 20 133909401 133912168 ECH
Ahy15g1795 15 61272152 61275262 Ahy20g2547 20 133909401 133912168 ECH
Ahy13g3855 13 137958919 137960571 Ahy20g2547 20 133909401 133912168 ECH
Ahy20g2547 20 133909401 133912168 Ahy20g2547 20 133909401 133912168 ECH