Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2540 ATGAGGAAGCGCCAAGTAGTTTTGAGAAGAGAGGAGCCAACAAGGAGTGTTAGGACGGTGAAATATGGTGAGTGCCAGAAGAACCACGCCGCGAGCGTAGGCGGCTACGCGGTCGATGGCTGCAGGGAGTTCATGGCAAGCGGCGAGGAGGGGACAGGGGCTGCCCTCGCCTGCGCCGCTTGCGGCTGCCATAGAAGCTTCCACAAGAGAGAGGTTGAGACTGAAGTAGTGTGTGAGTGTTCTTCACCACCACCCTCTAATAATGGAACTTCTTAG 276 0.5616 MRKRQVVLRREEPTRSVRTVKYGECQKNHAASVGGYAVDGCREFMASGEEGTGAALACAACGCHRSFHKREVETEVVCECSSPPPSNNGTS* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2540 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Ahy20g2540 91 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 72 IPR006456 -
Ahy20g2540 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 83 - -
Ahy20g2540 91 PANTHER BNAA09G44460D PROTEIN 14 83 - -
Ahy20g2540 91 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2540 Ahy-Chr20 133689912 133690417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2540 1 88 Zinc finger-homeobox gene family AT3G28917 72.000 8.38e-45 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy20g2540 ZF-HD_dimer 1.10E-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2540 - - aprc:113868039 149.058