Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2539 ATGCTTGGACTCTTGCATAGTACTACTCAAATTGAAACAAACACAATCGAATCTTCAACAAAAAAAAGAAACTATTATATTTTTGTGATCATGGGAAGACCACCATGTTGTGATAAAGAAGGTATCAAGAAAGGTCCTTGGACTCCTGAAGAAGACATCTTATTAGTCTCTTACATTCAAGAACATGGCCCTGGAAATTGGAAAGCTATTCCTTCTAAAACTGGTTTGTTAAGGTGCAGTAAGAGTTGTAGGCTTAGATGGACAAATTACTTAAGGCCAGGAATCAAAAGAGGTAATTTCACAAACCAAGAGGAGAATATGATCATTCACCTTCAAGCTCTACTGGGAAACAGATGGGCTGCAATAGCTTCCTACCTTCCACAAAGAACAGACAATGACATAAAAAATTATTGGAACACCTATCTGAAAAAAAGGCTCAGCAAGAAATTGGAAGAAGAAAAAAAAGATGGGTCTTGTTTGGCAAATAACAATAATGATTTTTCATCTCAGAAGGTTGTTATGCCACGTGGACAGTGGGAAAGAAGGCTCCAAACAGATATCAACATGGCAAAGAAAGCACTCACTCATGCACTCTCACCACAAAACAATAATAATAATAATATTAATATTGAATCCTTATCTTGTTCTTCTTCTTCCAATTCCAATTCTAATTCTTGTTCATCCAATAATAATAATAAAGCAACACAATCTTTAAGCTATGCTTCAAATGCTGATAACATAGCTCGGTTGCTCAAAGGGTGGATGAAGAAGAATAATAATAATGACACTGCTTCTAGCAAGGAGGGCATTTTCGGAACAAAAGTTTTTGGTAGTGAGGAGTGTTTGGAGTCTTCAAATAATACTAATTCATCATTAGAGTTTTCTCAATCAATTTATTCCCAACAAGAAGAGAGCAAGACTGAAGAAATTGGTGAAGTTTTGATGCCTTTCCATTTGCTTGAGAAATGGCTTCTAGATGAGACTAATATTGAGAAATTTATTTAG 1005 0.3522 MLGLLHSTTQIETNTIESSTKKRNYYIFVIMGRPPCCDKEGIKKGPWTPEEDILLVSYIQEHGPGNWKAIPSKTGLLRCSKSCRLRWTNYLRPGIKRGNFTNQEENMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRLSKKLEEEKKDGSCLANNNNDFSSQKVVMPRGQWERRLQTDINMAKKALTHALSPQNNNNNNINIESLSCSSSSNSNSNSCSSNNNNKATQSLSYASNADNIARLLKGWMKKNNNNDTASSKEGIFGTKVFGSEECLESSNNTNSSLEFSQSIYSQQEESKTEEIGEVLMPFHLLEKWLLDETNIEKFI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2539 334 SMART sant 96 144 IPR001005 -
Ahy20g2539 334 SMART sant 43 93 IPR001005 -
Ahy20g2539 334 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Ahy20g2539 334 Gene3D - 98 167 - -
Ahy20g2539 334 Gene3D - 43 96 - -
Ahy20g2539 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 146 IPR017930 -
Ahy20g2539 334 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Ahy20g2539 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 95 IPR017930 -
Ahy20g2539 334 CDD SANT 46 91 IPR001005 -
Ahy20g2539 334 CDD SANT 99 142 IPR001005 -
Ahy20g2539 334 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 31 266 - -
Ahy20g2539 334 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Ahy20g2539 334 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Ahy20g2539 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 31 266 - -
Ahy20g2539 334 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2539 Ahy-Chr20 133626852 133628703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2539 31 331 MYB Transcription Factor Family AT5G62470 46.667 1.26e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy20g2539 Myb_DNA-binding 3.60E-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2539 20 133626852 133628703 Ahy20g2539 20 133626852 133628703 ECH
Ahy20g2539 20 133626852 133628703 Ahy10g2052 10 108306081 108307916 hybridization
Ahy20g2539 20 133626852 133628703 Ahy14g2876 14 137340146 137342027 PCT
Ahy20g2539 20 133626852 133628703 Ahy4g2526 4 123026367 123028228 PCT
Ahy14g2876 14 137340146 137342027 Ahy20g2539 20 133626852 133628703 PCT
Ahy4g2526 4 123026367 123028228 Ahy20g2539 20 133626852 133628703 PCT