Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2538 ATGGGGGAAAGAAATATTGAGATGGAGAATAAGATTGAAGATGAGATGATGCCAGGTTTCAGATTTCACCCAACAGATGAAGAGATTGTTGGTTTTTATCTAAAAAGAAAAATTCAGCAAAAATCTCTCCCTATTGAATTGATCAAGCAAGTTGATATCTATAAGTATGAGCCATGGGACCTTCCAAAGGTGGCAAGTAATGGAGAGAAAGAATGGTATTTCTACTGTCCAAGAGACAGGAAATACAGAAACAGTGCAAGGCCCAACAGAGTGACAAGATGTGGGTTTTGGAAGGCCACTGGAACGGACAGGCCCATTTACTCATCTGAGGCCCAATCCATTATTGGTTTGAAGAAATCACTTGTTTTCTACAGAGGCAGAGCTGCTAAGGGTTTCAAAACTGATTGGATGATGCATGAGTTTAGGCTCCCTTCTCTTTCTTCTGATTCAGCCAAGAAATGCTCTGACAAAACTACCCCTGCTTCTGATTCATGGGCAATATGTAGGATATTCAAGAAAACAAACACAATGTCCATGGCACAAAAAGCCTCATTATCTCATCATCCTTATAATTGGAATCATCATAATCAATTATTTGATGATATACTCACACATCAACAACACCAACACCCTATTATTCCAAACTCCAACAACAACTTCATCTTCTACAATTCCAATTCTACCCTTGAACCCACAAAAGAAATTGATGCTACTACTACTAGTAGCTCCATTGTTATTTCTTCCAACATAGGCCTTCATGAAGATCCAAATCATCATCATTACAATAATAATAGTAGTGGGTTCTCATCTTCTTCAATTATGATGATGCAACCAAACATCATGGCAACCTCAGATGATGATGATTCAGGTGTAATTACAACAATTGCTGGCTTCCCATTCAATTTGCCTCCAAATGATGATGATGCTGCTTGGAATAATAATATTAAGCCTAATACTACTCTGCCATGGGACTACTTATCAGACATGTCCACTACCTATTCCACTAATAAATCTTACACTTAA 1023 0.3793 MGERNIEMENKIEDEMMPGFRFHPTDEEIVGFYLKRKIQQKSLPIELIKQVDIYKYEPWDLPKVASNGEKEWYFYCPRDRKYRNSARPNRVTRCGFWKATGTDRPIYSSEAQSIIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPSLSSDSAKKCSDKTTPASDSWAICRIFKKTNTMSMAQKASLSHHPYNWNHHNQLFDDILTHQQHQHPIIPNSNNNFIFYNSNSTLEPTKEIDATTTSSSIVISSNIGLHEDPNHHHYNNNSSGFSSSSIMMMQPNIMATSDDDDSGVITTIAGFPFNLPPNDDDAAWNNNIKPNTTLPWDYLSDMSTTYSTNKSYT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2538 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 206 - -
Ahy20g2538 340 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Ahy20g2538 340 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Ahy20g2538 340 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Ahy20g2538 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 9 206 - -
Ahy20g2538 340 SUPERFAMILY NAC domain 12 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2538 Ahy-Chr20 133573749 133576768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2538 1 187 NAC Transcription Factor Family AT1G26870 69.312 2.87e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy20g2538 NAM 3.00E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2538 - - aip:107621433 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2538 20 133573749 133576768 Ahy10g2051 10 108271553 108274308 hybridization