Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2532 ATGTCTAGCAGAAGGTCAAGGCAACAATCAGGGTCTAATAGAATCTCCGATGACCAAATCATCGAACTTGTTTCAAAGTTGCGCCAACTTGTTCCTGAGATTCGAGATAGGCGCTCTGATAAGGTTTCAGCTTCTAAGGTTCTACAAGAGACATGCAACTATATAAGAAACTTACACAGAGAGGTTGATGATTTAAGCGAACGTTTGTCTCAATTATTGGCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATAAGGAGCCTAATTAACCAATAA 279 0.405 MSSRRSRQQSGSNRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSAEAAIIRSLINQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2532 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 77 IPR036638 GO:0046983
Ahy20g2532 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Ahy20g2532 92 Gene3D - 2 87 IPR036638 GO:0046983
Ahy20g2532 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Ahy20g2532 92 CDD bHLH_AtPRE_like 9 75 - -
Ahy20g2532 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Ahy20g2532 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Ahy20g2532 92 Coils Coil 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2532 Ahy-Chr20 133378631 133381053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2532 14 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.923 1.87e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy20g2532 HLH 7.10E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2532 - - gmx:100794486 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2532 20 133378631 133381053 Ahy10g2046 10 108119841 108122538 hybridization
Ahy20g2532 20 133378631 133381053 Ahy14g2871 14 137271168 137272556 PCT
Ahy20g2532 20 133378631 133381053 Ahy4g2521 4 122967712 122969025 PCT
Ahy14g2871 14 137271168 137272556 Ahy20g2532 20 133378631 133381053 PCT
Ahy4g2521 4 122967712 122969025 Ahy20g2532 20 133378631 133381053 PCT