Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2528 ATGGCGTTCCCTCCTTCTCACTCTTTCATCTTCCATCATGATCATCAACAACCACAACATCACCCTCTCCGTACAACTCCTCCTTCAGCCCCCGCCTTCCCCTCTTTCCCGCCTCACCACCACCACTTTCCAGGAGGAGGTGGTGGTAGCGGTGGAGGCTCTTGGATGAAGCGATCCATGTCGTTTTCAGGCATAGACACCACCAAGAACTGTGGCGGCGGCGCCGGCGCTGACGAGTTAGCGCTACTGCACGGAGACGATGAGCTCTCCGACGACGGATCCCAAATCGGGGAGAAGAAGAAGAGGCTCGGCATGGAGCAGGTGAAGGCTCTGGAGAAGAGCTTCGAGGCCGGCAACAAGCTCGACCCCGAGCGCAAAATGCAGCTGGCCAAAGCCCTTGGGCTTCAGCCGCGCCAGATCGCCATTTGGTTCCAGAACCGCCGTGCAAGGTGGAAGACCAAGCAGCTCGAGAAGGAGTATGAGGTCCTCAAGAAGCAGTTTGATGCCGTTAAGGCCGATAACGACTCCCTCAAAACGCAGAATCAGAAGCTCCACGCTGAGCTAGAAGCTCTAAAGGGTAGTAGGGAATGGTGTGAAAATGGAACAATGATTACCCTAAAGAAAGAAAATGAGGGTTCTTGGAGCAACAATGGAAGTGATAATAGCTCAGATATGAACTTGGATCTTTCAAGAACACCAGTGATGAATAGTCCAGTGTCTTCTTCTCATAATAATAATAATAATAACAATAATAATAATAATAATAATAATAAAAGTCTTGTTCTACCAAATAATTCTCTTAAGCCAGCAAGCATAACACAGCTTCTTCAATGTTCATCTTCTTCAAGATCAGATCTTCAAGATGAAGGCTTTTGCAACATGTTCCACAACATTGATGAGCAGCACCAGAATTTTTGGCCATGGCCTACTACTGAGAATCACCACCATTTTCATTGA 957 0.4807 MAFPPSHSFIFHHDHQQPQHHPLRTTPPSAPAFPSFPPHHHHFPGGGGGSGGGSWMKRSMSFSGIDTTKNCGGGAGADELALLHGDDELSDDGSQIGEKKKRLGMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFDAVKADNDSLKTQNQKLHAELEALKGSREWCENGTMITLKKENEGSWSNNGSDNSSDMNLDLSRTPVMNSPVSSSHNNNNNNNNNNNNNNKSLVLPNNSLKPASITQLLQCSSSSRSDLQDEGFCNMFHNIDEQHQNFWPWPTTENHHHFH* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2528 318 Pfam Homeobox associated leucine zipper 154 193 IPR003106 GO:0006355|GO:0043565
Ahy20g2528 318 Pfam Homeodomain 100 152 IPR001356 GO:0003677
Ahy20g2528 318 SMART HOX_1 97 158 IPR001356 GO:0003677
Ahy20g2528 318 MobiDBLite consensus disorder prediction 209 264 - -
Ahy20g2528 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 318 IPR045224 GO:0003700
Ahy20g2528 318 CDD homeodomain 99 155 IPR001356 GO:0003677
Ahy20g2528 318 MobiDBLite consensus disorder prediction 24 38 - -
Ahy20g2528 318 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Ahy20g2528 318 MobiDBLite consensus disorder prediction 1 56 - -
Ahy20g2528 318 SUPERFAMILY Homeodomain-like 91 156 IPR009057 -
Ahy20g2528 318 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 318 - -
Ahy20g2528 318 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Ahy20g2528 318 Gene3D - 91 165 - -
Ahy20g2528 318 Coils Coil 146 194 - -
Ahy20g2528 318 PRINTS Lambda-repressor HTH signature 125 134 IPR000047 GO:0003677
Ahy20g2528 318 PRINTS Lambda-repressor HTH signature 134 150 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2528 Ahy-Chr20 133184542 133187464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2528 1 309 Homeobox Transcription Factor Family AT5G15150 47.678 5.07e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy20g2528 Homeodomain 2.00E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2528 K09338 - gmx:100816097 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2528 20 133184542 133187464 Ahy10g2042 10 107977618 107980472 hybridization
Ahy20g2528 20 133184542 133187464 Ahy14g2867 14 137211213 137214605 PCT
Ahy20g2528 20 133184542 133187464 Ahy4g2518 4 122915220 122918463 PCT
Ahy14g2867 14 137211213 137214605 Ahy20g2528 20 133184542 133187464 PCT
Ahy4g2518 4 122915220 122918463 Ahy20g2528 20 133184542 133187464 PCT