Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2518 ATGACAAAGAAAGAAGAGAACATGAAGAGGAGTTGGATGTCAATGCCACAAAGTGAGTTCCAAGTAGCAGCAAGGGGTAACAAGAGGAGAAGGAGAGAGCTTACTGCAGTTGCACTAACAAATGAAGAAAACCAAAGTAAGGAACAAACATTGCAGCCACACCAACAGCAACAGAAGGTTGATCAAAATTCCACTACCAACACTACAAAGAGAAGTTCAAGATTCAGGGGTGTCAGCAGACATAGATGGACAGGTCGATACGAGGCTCACTTATGGGACAAGCTCTCTTGGAACATAACACAAAGGAAGAAAGGGAAGCAAGTTTACCTTGGGGCATATGATGAAGAAGAATCTGCTGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCGATATCAGATTATGAGAAAGAGATTGAGATAATGCAAACTATGACAAAAGAAGAGTACTTGGCTACTCTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCACGGATCGGAAGAGTTTTTGGAAACAAATATCTCTACCTAGGCACATACAGTAAGTTAAACTGCTAG 639 0.4194 MTKKEENMKRSWMSMPQSEFQVAARGNKRRRRELTAVALTNEENQSKEQTLQPHQQQQKVDQNSTTNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSKLNC* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2518 212 Pfam AP2 domain 73 132 IPR001471 GO:0003700|GO:0006355
Ahy20g2518 212 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700|GO:0006355
Ahy20g2518 212 SUPERFAMILY DNA-binding domain 175 209 IPR016177 GO:0003677
Ahy20g2518 212 MobiDBLite consensus disorder prediction 38 73 - -
Ahy20g2518 212 ProSiteProfiles AP2/ERF domain profile. 176 212 IPR001471 GO:0003700|GO:0006355
Ahy20g2518 212 MobiDBLite consensus disorder prediction 1 77 - -
Ahy20g2518 212 Gene3D AP2/ERF domain 175 210 IPR036955 GO:0003700|GO:0006355
Ahy20g2518 212 Gene3D AP2/ERF domain 73 142 IPR036955 GO:0003700|GO:0006355
Ahy20g2518 212 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 19 208 - -
Ahy20g2518 212 SMART rav1_2 74 146 IPR001471 GO:0003700|GO:0006355
Ahy20g2518 212 SUPERFAMILY DNA-binding domain 73 142 IPR016177 GO:0003677
Ahy20g2518 212 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Ahy20g2518 212 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Ahy20g2518 212 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 208 - -
Ahy20g2518 212 CDD AP2 73 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2518 Ahy-Chr20 132806784 132808788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2518 70 208 AP2-EREBP Transcription Factor Family AT5G57390 69.784 6.43e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ahy20g2518 AP2 8.00E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2518 - - ahf:112716370 419.468