Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2515 ATGGCGGGAAGTGCAACTAACAAGGTTACATTTGTTTTCTTGGCTACTTTGGCCATTGTTGTTCGATGCATTGAAGCTGGTGGGAATGTGGTGTTTGATGATCATCTCAGAGAACAAGAGAGGATTGCTTATGAACTTGCCCTCAAAACTTACGTCCCAGACCCTTTGGAAGTTACATTCGAACTCAACCATCATGTTAACTTATTCATGAACAAAACTGAATCAAGAAGGAATCTGATGAAGATAAAGAGAAGGAACAGACGTTTTATCTGTGAAGCCACCAACCCCATAGACGGTTGCTGGAGGTGCGATCCCAATTGGGCCAGAAACCGCTTCAGGCTGGCGGATTGCGCAAAGGGATTCGGAAGAAGAGCCAAGGGAGGCTTAGGCGGCCCAATCTACGTTGTCACTGACGAATCCGACGACGACATGATAAACCCTAGACCCGGAACCCTAAGATACGGAGTCCTCCTGAGGGGACCAGTGTGGATCATATTTGCAAGAAGCATGTTGATCAACTTGAAGCAAGAGTTGATCGTGACCTCCGACAAGACCATCGACGGGCGCGGCGCCAACATTCAGATCAGGGGCGGCGCCGGGCTAACGTTGCAGTTCGTGAACAATGTTATCATTCATGGGATTCGCATCAAGGGAGTGAGGTCCAGATCTGGTGGTATGATAAGGTCAAGTGCAGATCATATTGGTCTAAGGATGAGGAGTGATGGTGATGGCATCACCATCTTTGGGTCAAGCAACGTTTGGATCGATCATATCTCCATGTCTGACTGCGAAGATGGCCTCATCGATGTTGTTGCCGGTTCCACTGGCATCACCATCTCAAATTGCCATATGACCAAACACAACGATGTGATGTTGTTTGGAGCTGATGACAGATACACAAGGGACAAGATAATGCAAGTGACGGTGGTATTCAACCACTTCGGACAAGGATTGATTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTTAACAACGACTACACCCACTGGATCATGTACGCCATTGGAGGAAGCTCAAACCCAACAATTCTAAGCCAGGGCAACCGCTTCATCGCTCCGAACAACATGGCGGCCAAGGAGGTCACCCACCGCGACTACGCCAGGCCCGAGGAGTGGGCCAACTGGCAGTGGCGCTCGGAGAATGACCTCTTCATGAACAACGCCAGGTTTGTTGAGTCTGGAGCTCCAATTACCAATCTACCCTTCAGGGGGTTCCTCATGACCCCTCGACATGGTTCTCATGCTAACAGACTCACTAGTTATGCTGGTGCTCTTACTTGCGTTGTTGGCAGGCCTTGCTAG 1332 0.494 MAGSATNKVTFVFLATLAIVVRCIEAGGNVVFDDHLREQERIAYELALKTYVPDPLEVTFELNHHVNLFMNKTESRRNLMKIKRRNRRFICEATNPIDGCWRCDPNWARNRFRLADCAKGFGRRAKGGLGGPIYVVTDESDDDMINPRPGTLRYGVLLRGPVWIIFARSMLINLKQELIVTSDKTIDGRGANIQIRGGAGLTLQFVNNVIIHGIRIKGVRSRSGGMIRSSADHIGLRMRSDGDGITIFGSSNVWIDHISMSDCEDGLIDVVAGSTGITISNCHMTKHNDVMLFGADDRYTRDKIMQVTVVFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWIMYAIGGSSNPTILSQGNRFIAPNNMAAKEVTHRDYARPEEWANWQWRSENDLFMNNARFVESGAPITNLPFRGFLMTPRHGSHANRLTSYAGALTCVVGRPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2515 443 Pfam Pectate lyase, N terminus 32 79 IPR007524 GO:0030570
Ahy20g2515 443 PANTHER PECTATE LYASE 6 443 - -
Ahy20g2515 443 SMART amb_all 169 366 IPR002022 -
Ahy20g2515 443 Gene3D - 94 436 IPR012334 -
Ahy20g2515 443 PANTHER PECTATE LYASE 18-RELATED 6 443 IPR045032 GO:0030570
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Ahy20g2515 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Ahy20g2515 443 Pfam Pectate lyase 176 360 IPR002022 -
Ahy20g2515 443 SUPERFAMILY Pectin lyase-like 85 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2515 Ahy-Chr20 132760390 132764463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2515 11 443 Polysaccharide Lyase AT1G14420 54.688 1.19e-176 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2515 K01728 - gmx:100810615 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1863 11 121100122 121103030 Ahy20g2515 20 132760390 132764463 ECH
Ahy13g3792 13 137107100 137108825 Ahy20g2515 20 132760390 132764463 ECH
Ahy20g2515 20 132760390 132764463 Ahy20g2515 20 132760390 132764463 ECH
Ahy20g2515 20 132760390 132764463 Ahy10g2028 10 107632782 107636415 hybridization