Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2502 ATGTCATGGCCTTCAGAAATAAAAAGCAATATTAATAACAAGGGAGGTGCAAACAAGGCTTGTGCTGCTTGCAAATTCCAAAGACGAAGGTGCACTAAGGATTGCATTCTCTCCCCTTATTTCCCATCAGATAAACCTACAACATTCACCAACGCACATCGTTTGTTTGGTGTTTGCAACATGACGAGGATTCTCAGCAAGATCAAACCAGAACAGCGGGATGAGTGCATGAAATCAATTATATTCGAGTCCGATATGCGTGCACAGTTTCCAGTAGAGGGTTGTTTAGGTATCATTCGTCGCTATAAAGATGATCTAGCCAAGGTCAATGCCGAGTTACACTATGTGCAGAGGTGGATCGCTTATTTCAAACAACAAGAACAATACCACCTACAGCAACAGCAGCAACAACAACAATATCTTTCTCTACCATTAATTCTGACACCAGATCAGCCATACAATCAAAGGAAAGATGACTGCACCAACATTGTTGCTCTTCCCGGTATTGGTGTTGGTGTTGGTGTTAATGATAATAATGTTCAGAAAGAAAATTCCAATGAAAAACTCGATTCGAAACTTGGAGCATTGTCGATGTGCGAACAATTTGTGGATTTAAAACCGTCAAAAGATAAATTAGGTGAATGCAGTGCTTATTCTTGTCAGCAAGTTGAAAATCAAGTTCATGCAAATCAGATGGATCTGGAGTCTGATCGGAGACTATTAAAGTTTTCTCCACAAAACAATACTATTGACTACAAACACAAGGATGGAGTTTCAATGGTAAACATCTTGCATGAAGGGAAACAACATCGTATGGACAAAGAACGAGCAAAAAATGATCGTTATATATGA 852 0.392 MSWPSEIKSNINNKGGANKACAACKFQRRRCTKDCILSPYFPSDKPTTFTNAHRLFGVCNMTRILSKIKPEQRDECMKSIIFESDMRAQFPVEGCLGIIRRYKDDLAKVNAELHYVQRWIAYFKQQEQYHLQQQQQQQQYLSLPLILTPDQPYNQRKDDCTNIVALPGIGVGVGVNDNNVQKENSNEKLDSKLGALSMCEQFVDLKPSKDKLGECSAYSCQQVENQVHANQMDLESDRRLLKFSPQNNTIDYKHKDGVSMVNILHEGKQHRMDKERAKNDRYI* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2502 283 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Ahy20g2502 283 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 17 188 - -
Ahy20g2502 283 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 188 - -
Ahy20g2502 283 Pfam Lateral organ boundaries (LOB) domain 20 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2502 Ahy-Chr20 132334268 132338021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2502 19 142 AS2 family AT3G13850 44.531 3.23e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy20g2502 LOB 1.20E-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1832 11 118583413 118585030 Ahy20g2502 20 132334268 132338021 ECH
Ahy20g2502 20 132334268 132338021 Ahy20g2502 20 132334268 132338021 ECH