Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2487 ATGGGAAGACCTCCTTGCTGTGACAAAACCAATGTGAAGAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAGATACTTGCTTATGTCTCCAACCATGGAATTGGAAACTGGACCTTGGTTCCCAAGAAAGCAGGACTGAACCGATGCGGAAAGAGCTGCCGGCTAAGATGGACTAACTACCTCAGACCGGATCTCAAGCATGACAATTTCACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGCAGCTATAGGAAGCAGATGGTCATTAATTGCGAAACGGCTTCCCGGGAGAACAGACAATGATGTCAAGAATTACTGGAACACAAAGCTGAGGAAAAAGCTTATGAACATGGGAATCGATCCGGTAACTCATAAGCCGGTGTCACAAGTCCTTTCTGACTTGGGAAGCATCAATGGCCTCCCAAGCACAGGAAACCAAATTGGTTTAGCCGCCAACAAGGATTTGATGAACAATATGTTACCAACCAGAACAGAACCATCCAACCCAATGGTGGAGCAGACACAAGAGGAACAAGCTCAATTTTGGGAAAATCAGGTGCAATACCAAGTCTTGGCCTCAGAATGTGTCCAACCAAATGTAGTCTTCAGCGAAGCTGCTTCGTCGAGTTCTTCCTCATCATCCTCCAATCTCACTCAATTGAGCTCCCCTCAGCAGTCATATAACTGTCACAATTCTCAAATAACTCCTTGTTCCTCGTCGTTTGATTGGAGTGACTTTCTTCATGGTGACTCAATCATGTGGTCAGAGATGCAGCAGTGTGATCCACAGAGGGTTATGTCATCCAGTGAGGCATTCGGCGCTGTTGCTTGCGGCGCAAGCATGTGTGAAGGCCGTTCAAATTCAGGGGATTCATTTGTGGATGGTATTTTGGACAGGGACAGTGAAATAAGGGCAGCATTCCCTGAACTTTTGGATGATGCTTTTGATTATTGA 960 0.4594 MGRPPCCDKTNVKRGLWTPEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDNFTPQEEELIINLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMNMGIDPVTHKPVSQVLSDLGSINGLPSTGNQIGLAANKDLMNNMLPTRTEPSNPMVEQTQEEQAQFWENQVQYQVLASECVQPNVVFSEAASSSSSSSSSNLTQLSSPQQSYNCHNSQITPCSSSFDWSDFLHGDSIMWSEMQQCDPQRVMSSSEAFGAVACGASMCEGRSNSGDSFVDGILDRDSEIRAAFPELLDDAFDY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2487 319 CDD SANT 69 112 IPR001005 -
Ahy20g2487 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ahy20g2487 319 PANTHER F14D16.11-RELATED 1 319 - -
Ahy20g2487 319 PANTHER F14D16.11-RELATED 1 319 - -
Ahy20g2487 319 CDD SANT 17 61 IPR001005 -
Ahy20g2487 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy20g2487 319 Gene3D - 7 67 - -
Ahy20g2487 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy20g2487 319 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Ahy20g2487 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy20g2487 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ahy20g2487 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy20g2487 319 Gene3D - 68 131 - -
Ahy20g2487 319 SMART sant 66 114 IPR001005 -
Ahy20g2487 319 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2487 Ahy-Chr20 131991267 131992911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2487 1 319 MYB Transcription Factor Family AT3G28470 50.294 6.50e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy20g2487 Myb_DNA-binding 6.60E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2487 K09422 - gmx:100815077 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2487 20 131991267 131992911 Ahy20g2487 20 131991267 131992911 ECH
Ahy20g2487 20 131991267 131992911 Ahy10g2003 10 106962868 106965340 hybridization