Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2470 ATGAAGAGGACAAGGGATGATGCTTACTCTGGCTCTCAATTCAAACGGCCCTTTGCTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGGGGCTGGAGGAGGAAGTGGAGGAGGTGGTGGTGGAGGAGCAACCCCGTCTCAGAAATTGACAACCAATGATGCCTTAACTTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAGAGAGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAGAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATATTTGGATTTAACACTTTCTTGCCTAAGGGATATGAGATAACACTTGATGAGGAAGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCGATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTCAAGGACCATACAGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATACTTCTCAAGCACCTTCTGCACAGCATGCTCCATATGGTCGAAGTTCATTGCAGCGATTCAATGAGCGGAGTTCTACAGCACCCATGATGCGACAAGTGCATGTAGACAAGCAACGTTATCGACGAGACAGGATTCTTGGCTCTCATGATCGTGATCAGAGCGTTGATCGAGCTGATCTGGATGATGACAAAATAAACATGCACAAGGAGCAGAGGAAACGTGAGAATAGGGATAGAAGAGTCCGTGATCATGATGAGAGAGAACAAGATCTTGATAATGGCAGGGATTTGAACTTGCAACGCTTTCAAGACAAAAAGAAATCTGTCAAGAAGGCGGAAGGGTTTGCCATGGCTTCTGACTTTCCTTCATATGATGACAAAGATGCGTTAAAGACCATGTATGGTCAAGCATTCAGCTTCTGCGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGGATAATAAAAAGGAACGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAACACTCTGATCTATTGCATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGAGTCTCTGTCTACCGATGGTCATATATCAAGATCATCAAAGTTGGAGGACAAAGATAAAGAGCACAAGCGTGAGATGGATGGACCTAAAGAGAAAGAAAGATACAGTAAATACTCGGGAAAATCCATTCAAGAACTCGATCTTAGTGACTGCAAACGTTGTACTCCAAGCTATAGGCTGCTGCCTGCAGATTATCCAATTCCTGTGGCTAGTCAGAGATCTGAACTTGGAGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGGAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAGATGCGAAGATGACAGATTTGAGATGGACATGCTATTAGAGTCAGTGAGTTCTGCTGCGAAACGTGTAGAGGAGTTGTCTAATAGCATTAATGAAAATAAGATGGAGAACCTGGGCCGTATTGAAGATCAATTTACTGCTTTAAATTTAAGGTGCATTGAACGTTTGTATGGTGACCATGGTCTCGATGTGATAGACATTTTGCGTAAAAATCCAACTCATGCTCTGCCTGTAATATTGACTCGACTTAAGCAGAAACAAGAGGAGTGGACTAAGTGTCGTGCAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAGAACCACTACAAGTCACTCGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGCACACGAAATATTTGGTGACCGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGATATTCTTCAGTCCATTGCTGCTGGAAGTAAACAGCCTCTAACTCCACATCTTGAGTTTGAATATCCTGATGCTGCAATTCATGAAGACTTGTATAAACTTATTCGGTATTCATGTGAGGAGATTTACTCTAGTAGGGAGTTGATGAATAAAACTATGAGGCTCTGGTGTACCTTTTTGGAACCGATGCTTGGTGTTCCTTCCCGATCTCATGGGACAGAAAAGGTGGAAGAGAGGAAAGCAGGGCCTAATGTTGGCAATGCAGGCAATGGAAGTCCTCATGGAGACTCCATTTCAATTAATTCAAGGTTACCAAAATCTGACAAGAATGAAGCAGATGGTAGAGTACCTGATGTAAAGAATGTTCACCGGACTAGTGCTGCAGCTAATGATAAAGAAAATGGATCTGTTGGTCGTGAAAATGTCTGTAGAGATGAACTCCCACTGGATAAAGGGCAGACAAATATAGAGTGCACCGATAAAGTCTCTGGGATTAATAAACAATTTTCTGCTGATGAACAAGGAGCTAAAAACAATGCATTAATTTCAGTTAGAGGAGAAAAATTAGAAGATAATCCTAGCAGGAACAACGAAGAATTGACTCCAGGCACTGTCACTACTCCTTCTCGACCTACTGACGCTGACGAATCCGTACCTAAACCTCAGGAAGTAAATGCTACTTTGGTAGAGGGGTCTGATGTTACAGCTCCAGTTACAGTGGCCGATGGGGTACCAACTCAGAGCAGTAAAGTTAGAAGCCATGAAGAATCTGCTGGGCCTTGTAAAACTGAAAAGGAAGAGGGCGAGTTATCACCAAATGGTGATTCGGAGGAGGATAACTTTGTTGCTTATGGAGATTCAAATGTGCAGTCAATGTCTAAGTCAAAGCACACTATTGAGAGAAGAAAATATCAGTCCAGAATTGGAGAGGATGAGTCCTGCCCAGAGGCTGGAGCAGGCGATAATGATGCAGATGCAGATGATGAGGACAGTGAAAATGTGTCTGAAGCTGGTGAAGATGTCTCGGGCAGTGAATCTGCTGGTGATGAATGCTTCCGAGAGGACCACGAGGATGAGGAAGATATAGAGCATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCAGAGGGTACATGTGATGCACAATCTGCTGGAGGAGATGGTTCATCTCAGCCACATTCAGAAAGGTTTCTTTCGTCTGTGAAACCTCTGACAAAGCATGTTTCAGCAGTGTCATATGTTGAAGACATGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCACTTTTTAGGCTTCATCAACTTCTTTATGAAAGGATCTTGTCTGCAAAAACCAATGCCACGAATTCAGAAATGAAATGGAAAGCCAAGGATGCCAGCTCCCCAGATCCTTATTTGAAATTTATGGATGCATTGTACAGCCTTCTTGATGGATCTTTTGAGAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGCAACCAGTCATATGTGTTATTCACATTGGACAAATTAATATATAAACTAGTTAGACATCTTCAAAATGTTGCAACAGATGATATGGCCAATAAGCTTCTCCAATTGTATGAGTACGAAAAGTCTCGGAAACCTGGGAAACTAAACGATTCAGTATATCATGCAAATGCACATGTTATCCTTAATGAGGACAATATATATCGATTGCAATGTTCCTCACCACCCTCTCGGCTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTTTCTATTGATCCAAATTTTTCTTTTTACCTTCACAATGATTTTCTCTCCGTCCTTCCTTCTAAAAAGGAACCCCATGGCATTTTACTTCAAAGAAACAAACGCAAATTTGGAGATATTGATGAGCTTTCTGGAATAACTTCTGCTATGGAAGGTGTCAAACTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATCTCCTATGTTCTCGACACACAAGATTTCTTTTTCCGGCCGAAAAGGAGAAGGCAAGCGTCACCGGAAACCAGATCTTGTCGACACCGGAGGGACAGAGAGGAAAGATACCGCAGGTTGATGGCGACCGTGTCTCAATGA 4107 0.4164 MKRTRDDAYSGSQFKRPFASSRGDSYGQTQGAGGGSGGGGGGGATPSQKLTTNDALTYLKEVKDMFQDQREKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEEEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHTDLLDEFTRFLPDTSQAPSAQHAPYGRSSLQRFNERSSTAPMMRQVHVDKQRYRRDRILGSHDRDQSVDRADLDDDKINMHKEQRKRENRDRRVRDHDEREQDLDNGRDLNLQRFQDKKKSVKKAEGFAMASDFPSYDDKDALKTMYGQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLLHEFNDFLERCENIESLSTDGHISRSSKLEDKDKEHKREMDGPKEKERYSKYSGKSIQELDLSDCKRCTPSYRLLPADYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFEMDMLLESVSSAAKRVEELSNSINENKMENLGRIEDQFTALNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWTKCRADFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLHTKYLVTEIKEIKEKQQKEDDILQSIAAGSKQPLTPHLEFEYPDAAIHEDLYKLIRYSCEEIYSSRELMNKTMRLWCTFLEPMLGVPSRSHGTEKVEERKAGPNVGNAGNGSPHGDSISINSRLPKSDKNEADGRVPDVKNVHRTSAAANDKENGSVGRENVCRDELPLDKGQTNIECTDKVSGINKQFSADEQGAKNNALISVRGEKLEDNPSRNNEELTPGTVTTPSRPTDADESVPKPQEVNATLVEGSDVTAPVTVADGVPTQSSKVRSHEESAGPCKTEKEEGELSPNGDSEEDNFVAYGDSNVQSMSKSKHTIERRKYQSRIGEDESCPEAGAGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEDEEDIEHDDVDGKAESEGEAEGTCDAQSAGGDGSSQPHSERFLSSVKPLTKHVSAVSYVEDMKDSRVFYGNDDFYALFRLHQLLYERILSAKTNATNSEMKWKAKDASSPDPYLKFMDALYSLLDGSFENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRHLQNVATDDMANKLLQLYEYEKSRKPGKLNDSVYHANAHVILNEDNIYRLQCSSPPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNDFLSVLPSKKEPHGILLQRNKRKFGDIDELSGITSAMEGVKLINGLECKIACSSSKISYVLDTQDFFFRPKRRRQASPETRSCRHRRDREERYRRLMATVSQ* 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2470 1368 ProSiteProfiles PAH domain profile. 48 118 IPR003822 GO:0006355
Ahy20g2470 1368 ProSiteProfiles PAH domain profile. 132 202 IPR003822 GO:0006355
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 14 32 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 202 304 - -
Ahy20g2470 1368 Gene3D Paired amphipathic helix 54 116 IPR036600 GO:0006355
Ahy20g2470 1368 Gene3D Paired amphipathic helix 131 203 IPR036600 GO:0006355
Ahy20g2470 1368 Pfam Sin3 family co-repressor 455 549 IPR013194 -
Ahy20g2470 1368 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1356 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 728 802 - -
Ahy20g2470 1368 SUPERFAMILY PAH2 domain 129 201 IPR036600 GO:0006355
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 411 440 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 235 304 - -
Ahy20g2470 1368 SMART hdac_interact2seq4b 453 553 IPR013194 -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 847 1059 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 916 931 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 956 971 - -
Ahy20g2470 1368 Pfam Paired amphipathic helix repeat 155 199 IPR003822 GO:0006355
Ahy20g2470 1368 Pfam Paired amphipathic helix repeat 353 397 IPR003822 GO:0006355
Ahy20g2470 1368 Pfam Paired amphipathic helix repeat 71 115 IPR003822 GO:0006355
Ahy20g2470 1368 Gene3D Paired amphipathic helix 328 402 IPR036600 GO:0006355
Ahy20g2470 1368 PANTHER SIN3B-RELATED 1 1356 IPR039774 GO:0003714
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 857 874 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 977 997 - -
Ahy20g2470 1368 SUPERFAMILY PAH2 domain 46 117 IPR036600 GO:0006355
Ahy20g2470 1368 SUPERFAMILY PAH2 domain 333 400 IPR036600 GO:0006355
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 767 781 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 1013 1028 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 751 766 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 1 49 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 202 229 - -
Ahy20g2470 1368 MobiDBLite consensus disorder prediction 413 440 - -
Ahy20g2470 1368 ProSiteProfiles PAH domain profile. 331 400 IPR003822 GO:0006355
Ahy20g2470 1368 Pfam C-terminal domain of Sin3a protein 1086 1333 IPR031693 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2470 Ahy-Chr20 131498901 131515943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2470 22 151 WRKY Transcription Factor Family AT4G12020 44.138 6.58e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy20g2470 Sin3a_C 1.50E-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2470 K11644 - gmx:100807181 2132.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2470 20 131498901 131515943 Ahy10g1987 10 106633703 106649404 hybridization