Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2433 ATGGCCATGGCTGCTCTCCGTCGTGAAGGGAGGCGATTCGCCACCCCACTCCTCTCTTCTCCTATCCGCTCCTCTCTCATCTCTCACTCTCAAGAACAAGCTCCCAATGGAGTGCGCTCTATTTCGACTCAAGTTGTGAGAAACAGGATGAAGAGTGTTAAGAATATCCAGAAGATCACAAAGGCAATGAAGATGGTTGCAGCCTCTAAGCTTAGAGCTATTCAAACCAGAGCCGAAAACTCCCGTGGTCTCTGGCAACCATTCACTGCCCTTCTGGGTGACTCTCCCAGTGTTAATGTCAAGAAGAGTGTTATTGTTACCATTTCTTCAGACAAAGGTCTTTGTGGTGGTATCAATTCCACATCTGTCAAGATAAGCAGGATTTTGCACAAATTGAGCTCTGGGCCTGAGAAAGAGACAAAGTATGTCATATTGGGTGAGAAGGCTAAGGCTCAATTGATACGTGATTCCAAGAATGACATTAGTCTCAGCATAACTGAGCTGCAGAAGAACCCCCTGAACTATTCTCAGGTTTCAGTCTTGGCAGATGACATCCTAAAGAATGTGGAGTTTGATGCCTTAAGGATTGTGTTCAACAAGTTCCATTCAGTTGTCCAATTTATGCCAACTGTGTCAACTGTGCTCTCTCCTGAGATTGTGGAGAGAGAGGCTGAAGCTGGGGGAAAGCTTGGGGAGCTAGACTCTTATGAAATTGAAGGTGCCGAGACAAAAGGAGAAGTTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTATATTGTTCAATGGGGTGTTGGAGAATGCTTGCAGTGAACAAGGAGCAAGAATGTCTGCCATGGACAGCTCTAGCAGGAACGCCGGAGATATGCTCGACCGACTCACTCTCACCTACAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATATCTGGAGCTTCAGCACTGGAAGGTTAA 966 0.4586 MAMAALRREGRRFATPLLSSPIRSSLISHSQEQAPNGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDSPSVNVKKSVIVTISSDKGLCGGINSTSVKISRILHKLSSGPEKETKYVILGEKAKAQLIRDSKNDISLSITELQKNPLNYSQVSVLADDILKNVEFDALRIVFNKFHSVVQFMPTVSTVLSPEIVEREAEAGGKLGELDSYEIEGAETKGEVLQNLAEFQFSCILFNGVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2433 321 CDD F1-ATPase_gamma 42 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 PIRSF ATP_synthase_gamma 10 319 - -
Ahy20g2433 321 ProSitePatterns ATP synthase gamma subunit signature. 305 318 IPR023632 -
Ahy20g2433 321 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 42 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 Gene3D ATP synthase, gamma subunit, helix hairpin domain 46 316 - -
Ahy20g2433 321 PANTHER BNAA05G10580D PROTEIN 1 320 - -
Ahy20g2433 321 PANTHER ATP SYNTHASE GAMMA CHAIN 1 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 319 IPR035968 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 Pfam ATP synthase 44 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 Gene3D - 66 278 - -
Ahy20g2433 321 PRINTS ATP synthase gamma subunit signature 297 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 PRINTS ATP synthase gamma subunit signature 100 119 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ahy20g2433 321 PRINTS ATP synthase gamma subunit signature 266 285 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2433 Ahy-Chr20 129990555 129994492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2433 46 319 Primary Pumps ATPases AT1G15700 29.538 7.64e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2433 K02136 - rcu:8286653 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2433 20 129990555 129994492 Ahy20g2433 20 129990555 129994492 ECH
Ahy20g2433 20 129990555 129994492 Ahy10g1954 10 105593894 105597883 hybridization
Ahy1g2714 1 106486311 106487937 Ahy20g2433 20 129990555 129994492 PCT
Ahy20g2433 20 129990555 129994492 Ahy1g2714 1 106486311 106487937 PCT