Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2429 ATGGCTTTCCTCAGTAGAGCTGGAAATATACTAAGGCAAGTGACAAGTAGGAAGATCAGTTCGGATTTATGTGAAATCCCGTCTGTTTTCCGGTCTGTACGGTGCATGTCAAATGCTCCAAGTACAAAGCTGTTTATAGGAGGTGTTTCGTATTCCACTGATGAGCAAAGTTTGAGGGAGGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCGGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGCCGAGTTAAGGTAAATTTTGCAAGCGAAAGACCTCGTGGATTTCAAGGTGGTGGTTTCGGTGGCTCTTTTGACAATGCTCCCTATGGTAACTCTCCATATGGTGCCAGTTTAGGTGGTGGTGGCAGCTATGGTGGTGCATATGGTGCCAATGTTGCTGGAGGTTATGGTAACGGAAGCAGTGGATATGGCGGAGACAGCTATGGATCAGGTGGTAATTTTGCAGGCAGTGTCTCTGGCGATAACTATGCTGCTGATAACAGTTTTGGAACTGGAACAGCTGGTAGCAATTACAGTGGAAATGGGATGAAGCATGCAAATGACAGTAGCTTCCCAAGTGGAAACACTTACAACAGTGAGAGTAGCGGAGGTTATGGTGGAGGAAATGATATTGGTACTTATGGTAATGCTGCTGCTAGTGGTGGAGGCTATGGTGGCTATGTCCCGGCTTCTGGATTTGACAGGAGCAATAATTACAACACTTCTGCTGGATTTCCTAACAGTGATAACTATGCCAACGCTGCTGGTGGTGGTGGAAACAGTTTCCCCAGTAGTCAATACAATGGAAGTGCCATGGCCGGGTATGGCAGTGGTGGTGTGGGTTCTGGCAGCAGTTTTGCCAGTGGATATGGAGCAACGGGACATGGTAGCACTAATGAATGCAATAACGATCAAGGAACTACTGTGGATGATTTTGGAGGCTCCATGGAATCAAATTTCAAGGGTAACTATGAGGAATCCGGTGCTTATGCAAAACGGGCTTGA 1095 0.4648 MAFLSRAGNILRQVTSRKISSDLCEIPSVFRSVRCMSNAPSTKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFDNAPYGNSPYGASLGGGGSYGGAYGANVAGGYGNGSSGYGGDSYGSGGNFAGSVSGDNYAADNSFGTGTAGSNYSGNGMKHANDSSFPSGNTYNSESSGGYGGGNDIGTYGNAAASGGGYGGYVPASGFDRSNNYNTSAGFPNSDNYANAAGGGGNSFPSSQYNGSAMAGYGSGGVGSGSSFASGYGATGHGSTNECNNDQGTTVDDFGGSMESNFKGNYEESGAYAKRA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2429 364 MobiDBLite consensus disorder prediction 324 344 - -
Ahy20g2429 364 MobiDBLite consensus disorder prediction 324 364 - -
Ahy20g2429 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Ahy20g2429 364 Gene3D - 32 184 IPR012677 -
Ahy20g2429 364 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 218 - -
Ahy20g2429 364 SUPERFAMILY RNA-binding domain, RBD 38 152 IPR035979 GO:0003676
Ahy20g2429 364 SMART rrm1_1 43 116 IPR000504 GO:0003723
Ahy20g2429 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Ahy20g2429 364 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2429 Ahy-Chr20 129876834 129879333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2429 44 190 Eukaryotic Initiation Factors Gene Family AT3G16380 31.579 1.20e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2429 K12741 - ccaj:109815980 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2429 20 129876834 129879333 Ahy20g2429 20 129876834 129879333 ECH