Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2423 ATGAATCTAACGACGATGATGATGGAAACAAAGGAAGAAGGCATGATAATAGAAGAGAACAAGAAGAAGAGCAATGAAAATGACAAGTTTACCCTGAAAGGATCGGCGGCGGCGTCGTCATCAACAAGGCAATGGTCGGCGTTTCGGAATCCAAGAATCGTGAGGGTATCAAGGTCATTTGGGGGAAAAGACAGGCACAGCAAGGTTTGCACCATAAGAGGGCTTCGTGACCGTCGGATCAGGCTCTCAGTCCCCACCGCCATTCAATTGTACGACTTGCAAGACAAGTTGGGACTCTCTCAACCAAGCAAAGTCATCGATTGGCTTCTTGATGCTACAAAGCTTGATATCGATAAGCTTCCCCCTCTTCACTTCCCTCAGCCCTGCTTCCAACCGCCGCAAACCCTATTCCCTCATCTTCTCCATGACCCTTCCTCTTTCTGGAAACCCAGGTTCTGGGAATTGGACTCTTCCGCTTCCTCCTCTTCTTCTTCCAGGTTTCTCAAAGGGAAGGACTTGATGACCACCATGCCTTCCGATAATAATAACAATAAAGCCAAGTGGATCTTCAAATCAAACAATGCAGATCATGAGAATCAAGAATTTGGAGGCGGTTACACTACTCAGAGACTTTTCCCAATGGAGACTCAGACTACTACTAATAATAATCCTTTTCAGAGTTTGTTCTTCAGCAACAACAACAACAACAACAACTCTACTCCTGAGGCTTCTAATTTGGGAAGCCATGGATTGTTGTTTCCTTCTAGTTCTTGTTCTTCTTCTTCTACAAGTCTTTATCATCACCATCATCAAGTGGGAGATTACTATGGCAGTTATCCAATGATGAATAACGGGGGTTTGATGCAATTGAACCATTTATCTTCTTTGCAAGTAGGCCCATCTGGTTCCTCACAATTATTGTTTGGTCCTTTATCTTCTGCTACTGCTGTTGCTGCTGCTACACCGCAGATTTTCACACCTTATGCACCATTTGTAACAACCCCATCATCTCTTCTGGAAGGTAGTAGTCATAATAATAATAATAATAATAATGGCGGTGGTGATTCAATAAAACAACAGCATCAATTCATCAATAGTCACATTCATCAGTTCTTGAACTCATCGTCCTCATCCACATCATCATCATCATCAACAAGCCTTCTTCTCCATCACCATCATCATTCATTATTCAGTTCATCATCACCTGTCAGACCCTTCTTCCCTACACCCTTCAGTTCCAAGCTTCTAGATTCTTCCTCGTCAGATCGTAATGGAAGCCACCAACCAGATCATAATAATAAGGCTACTACTACTACTACTACTACTACTTCAGCTCGTTCTTGA 1344 0.4293 MNLTTMMMETKEEGMIIEENKKKSNENDKFTLKGSAAASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKLDIDKLPPLHFPQPCFQPPQTLFPHLLHDPSSFWKPRFWELDSSASSSSSSRFLKGKDLMTTMPSDNNNNKAKWIFKSNNADHENQEFGGGYTTQRLFPMETQTTTNNNPFQSLFFSNNNNNNNSTPEASNLGSHGLLFPSSSCSSSSTSLYHHHHQVGDYYGSYPMMNNGGLMQLNHLSSLQVGPSGSSQLLFGPLSSATAVAAATPQIFTPYAPFVTTPSSLLEGSSHNNNNNNNGGGDSIKQQHQFINSHIHQFLNSSSSSTSSSSSTSLLLHHHHHSLFSSSSPVRPFFPTPFSSKLLDSSSSDRNGSHQPDHNNKATTTTTTTTSARS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2423 447 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 433 IPR005333 GO:0003700
Ahy20g2423 447 MobiDBLite consensus disorder prediction 415 447 - -
Ahy20g2423 447 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Ahy20g2423 447 MobiDBLite consensus disorder prediction 339 358 - -
Ahy20g2423 447 Pfam TCP family transcription factor 62 181 IPR017887 -
Ahy20g2423 447 PANTHER TRANSCRIPTION FACTOR TCP17 7 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2423 Ahy-Chr20 129506262 129508228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2423 12 214 TCP Transcription Factor Family AT5G60970 47.768 9.12e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy20g2423 TCP 2.30E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2423 - - aip:107621125 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2423 20 129506262 129508228 Ahy10g1936 10 105064563 105066393 hybridization
Ahy11g2029 11 129310466 129312285 Ahy20g2423 20 129506262 129508228 PCT
Ahy1g2890 1 109774278 109776094 Ahy20g2423 20 129506262 129508228 PCT
Ahy20g2423 20 129506262 129508228 Ahy11g2029 11 129310466 129312285 PCT
Ahy20g2423 20 129506262 129508228 Ahy1g2890 1 109774278 109776094 PCT