Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2420 ATGTATCATCAAGTGAGCCATGGCCCTTCTTTAGGACAAGGTGGTTCTCACCCTCCTCCGCCACCTCCGCCGAATGCTTATCAACAGCAACAACCTCCGCATCATCATCATCATAATCGCAATCCTCCACCTCCACCACCACAGTTTCAGCAGGGTGGTCCTATTCCGGTTCCACAAGGTCATCATATGTACCTACATGGTCATGGACCACCCAATGCACCTTCCACTAGTTCTGTGAATCTTCCCTTTCAAGCTCCACCTGGAATGGTGCAAAGTGCAGGGCAGTATGGGAACAGCATGGCGGCACAAACATTTACTAGCGTTGGACAGAATTTAGGGGCTCAGAGTCATCACATTCTGCCATCTCCTCCTCCTGTGCCACCATCTAGAGCACTACCACCTCCGCCGCCGCTGCCTGCATCTTCCCAGGGGGAAATTTTGTGTAAACCTCCTTTTGGTCTGCCTCCACCACCCCCTGCTGGATATGTTGGGAATTATCAAGTTCCTCCTGTTGCTCCCCCACTGCCGCCACTGCCATCCTCTCCACCGCCTATTCTGCCCCCTGCCCCTCCTATGACTTCCACCTCTGGCGAGGTTTCTGGCACTGAGTTGAAGGCTGTGGATTCGGTTGAAAAAGGTGTGGCTTCCTATCCATCTGGTATTGCACCTATATGCAATTATGATCCTAATGGGGAGAGTGGAAGTTGCAGAGAGTTTGCTGCTTCTGCTGATAGAAATGAACTATTGTCAAATAAAAGTGGAAATTTGGATCCTCCCCCACCTCCGCCATCAGAAGAAAAAACTGTTCAGAAGATTGAAGCTTTATGTCAGCTTATTGCTGAGAATGGTCCTGATATTGAAGACAAGATTCGTCAAGAGGAGTTTCAGAATCCTGAGTATCAGTTTTTGTTTGGTGGTGACCAAACTGAAGCTGCAATCTCCCACACGTATTTCCTCTGGATGAAGAAGAAATACAATTTGGAAGATAGATGGCTTGAGAAGAAAGCTGAATCACAGTTAAGACCTCTATCAGTAGACTCTACAGGGCCACTGTATCATCTGCATGTTGCAACCGAAAATGCTGATTCTGACATGGAGATGGAAGATGATATCACTCTTTCCGACAAGGACCAGGGACCAAATTATGCAATTGAAGCTCTAACTCAGCAGCCTCATCAGGTTGGTGAGGAATGTAAAATGAATGAGTATACACATCAGCTGCAGAATTCAACAGAGAACGATCCCTCCAACGACATCTTAGCCAGTGATGCATCAACACGTGGATCCATGGGAATCGGCAACCAACATGAAGGACCTGGGAATATCTCCAATTTTGAGCAAATGAAATCTGCAATATCAGTTACCAAGGTTCATAGTCCTGTGAATGGATCAAGTGAAGTGGCTAAAGTCCCCCTTGGCACAGGTTTTGAGAAATCTGCAGCTCCTCTAGCAGAAGGTTTTATTCGAAATGGGACTTCTGATCTTGTGGAAGCCATTGATGCTGATAGAGATTCTGGACAACTTATAAGGAGTGGCAGCCCAATAAAGCTACTTCAAGATTATGCTTCTGATGATACTTCAGGTAATGAAGATGAAATATCAGCAGGAGCTGGCAGTGGTGTTTCAATTGCGCATAAAGATTCCAGGAGTCGCTTAGAGACTGATATTGGATCCAAGAGTCCCTCCGGTACACAAAAGGGGTTTGGACAGCTCTCTGAAACAACTCTGGATAATTTAGTACAAACATCTAAGGAACCCATTGAAGATTACCATGAAAATCAGGTGTCTGTTGCTGCTTCCTATGAAACCATCGCAGTGAAAGATAAGTTAGGTAGTAAAAGTAACAATGCTGAACCGGAGGATGAGAGGAAATCCTCAAAGTTTGAAAAGAATATCTTGAAGGTAGATAAATTTGGAAGGCATCCCAAAGAAGCTCCTACAGATAGTGACTCCGAGTCTGATGATTCTCACTATCGTCAGACTAAGAGGGGAAGCAAAAGAGGCAGAGGGAGGAGTCACAGCAGATCTCCTGAACACAGAAGTCGGAGTAGGAGTAGGAGGAGGAGAAAGAGTCCCCGGAGGAGAAGGGATAGAAGAAGCCGATCTCGAAGCCGGTCTCCACGATATCGTAGAAGCAGGAGTAGGTCTCCAATCTTAAGACGTACAGGGGACTTTGGTGGTGAGAATGTGAAAAGGGACAGGGGCCAATGCTTTGGCTTCGTTCGGGGGAAGTGCCATCGTGGAGCATCTTGTAGGTTCTCTCACCATGAATCTGACAAGAATGTTAGTTTGAGGCGCCATAGGAATAAATATGACCAAGAAGTCCATTCTCATGCAAAACATGTTAGTGATGGTATAAGAAGTCAGGGTGTGGATCAAAAGCAGGAGACAAATGAAAAAGAAAATTCTGTTAGGTATGCAAATCTGCCTAATACTTCTGGTATTGACAGTCAATCAGTAAGGAATGATCCAATTAAATCTGAAAGTTTCAGAGAGACTGTTCTTGAAATGAAGGAAAGTTTGGTTGGTTTTCTTCCTGAAGTTTTAAGTGGTGATGATGCCTCTAAACCATGTGATGGCACAAATGAAGATGGTGTTCATGCAGAAGATAATTCATTTGTTCACAAGATACAACCCAATGTTCCTGTTGGAATTACAGAGCATCCTAGTTACTCATCTAGTATCCAAACTTTACCATATATGTTACCACCAACTCAGCCATTGTCTGCCCCTGGCTCTGTTGGTCCATCACCTTCATCAAGACGGCCTTTATTACATAGTAGTTCCTCGGTGGAATTACCACCTCATGCTTACCAGTTGCCTCCCCCACCTGTTGTTTCACATGCACTGGGTGAGAATGCTGTGAATTTGCCACAAATTTCAAGGGACTATGGTGTAACACAAAAAAATACATTATTCCCTTTTCAGCCCACTACTAGAGATAAATTTGAACCTTCCCCAGCTCTGATTCACATGCAGAGTCCTCACTTCAGTGTACCACTACCACCTAATTACCCTTGGACATCATTGCCGCTACCACCACCTCCTCCTCTCCCTTCACAAGTTGCACATAATCCCAGTATAAGTTCCGGAGTTTCAACATCATATGTCTCTTCAGAATTTAATCAAACTCAATTGCATTCAAGAGGGGACTTTGTTTCTCTGACTTCTGGTAAGCCTGGATTGCCTTCTCATTCTCAGAGTTCTGAGTTTCAGGATCATGCCTACCCAGCAAATCAATTGCTTTCAGGTCCAAATGTTAGTGGAGAAGACCATTATAAGCAATTACCCATGCAAGATTCAAACCTTTCAAGCTCTGGTGGTTCACATCGTCTACAAAACCAATATTCCTGGCAGTCAGATGCTATCAGAATACAGCCTTCTGTTGGTGCGAATTTACCTCCAGAAGATCATTTCAAGACATCTTCCCACACACTTGCATCATCACAGAAGCAACAACCAGTGCATAGTTTTCAATATTCTGCATCTGAGGGTAATTTGGGTGTGCCTGGAGAAACTGTTACCTTATCTAGATATCCACCGGATGTTCTCGATAGCAATCATTCAACTTCTCTTCCAACTTTTGTGGGGTCAGGAATTCCTGCTCACTGTAATCCTTATGCTTCAACCTTTGAGCAGCCGCTTACTTCCAAACTCAGTTCAACTATTTTTAGACAAGAAAGTGATGTAATCCATGGAGACAATAATTCTGGGTTGAACCCTATTTCTATAAATAGGGAAGGCGCCGTTGGTGTTGAACCAAAGTCTTCTAGAGCTAATCAGTATGATCCTCTGTTTGACAGCATTGAACCACCATTGTCTTCTCTCAAGAAATTTGATTTTGAAAAACAGGAAGTTACAGGTGAATCCAATGTCAGCCTAAGGCCCAAAAGTTCTAATATGCCGTTGGATGCGGAAGAGCAAAATAAGCATGAGGAGGTTGGAGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATATGGTGAGACTGCAGATGCAGAGGTGGATGATGTTGAAAATGAGAGCCTAAGTAATCATGTGGATGTTGCAAACATGACTCCAGGGGAGGTCGAGATTAATCAGACTAAGTCTCCAGGGAAGAGAAAGAAGAGCAAGGATTCTAGATCAATGAAGTTGTTCAAAGTTTCCATTGCAAATTTTGTTAAGGAGGTTTTGAAACCGTCATGGCGGCAGGGAAATATGAGTAAAGTTGCATTCAAAACAATTGTGAAAAAAACTGTTGACAAGGTGTCAGGAGCCATGAAAGGCCATCGTATGCCCAAGTCCCAAGCAAAGATAAGCCAATACATTGACTCATCACAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTCAAGTCATAA 4380 0.4393 MYHQVSHGPSLGQGGSHPPPPPPPNAYQQQQPPHHHHHNRNPPPPPPQFQQGGPIPVPQGHHMYLHGHGPPNAPSTSSVNLPFQAPPGMVQSAGQYGNSMAAQTFTSVGQNLGAQSHHILPSPPPVPPSRALPPPPPLPASSQGEILCKPPFGLPPPPPAGYVGNYQVPPVAPPLPPLPSSPPPILPPAPPMTSTSGEVSGTELKAVDSVEKGVASYPSGIAPICNYDPNGESGSCREFAASADRNELLSNKSGNLDPPPPPPSEEKTVQKIEALCQLIAENGPDIEDKIRQEEFQNPEYQFLFGGDQTEAAISHTYFLWMKKKYNLEDRWLEKKAESQLRPLSVDSTGPLYHLHVATENADSDMEMEDDITLSDKDQGPNYAIEALTQQPHQVGEECKMNEYTHQLQNSTENDPSNDILASDASTRGSMGIGNQHEGPGNISNFEQMKSAISVTKVHSPVNGSSEVAKVPLGTGFEKSAAPLAEGFIRNGTSDLVEAIDADRDSGQLIRSGSPIKLLQDYASDDTSGNEDEISAGAGSGVSIAHKDSRSRLETDIGSKSPSGTQKGFGQLSETTLDNLVQTSKEPIEDYHENQVSVAASYETIAVKDKLGSKSNNAEPEDERKSSKFEKNILKVDKFGRHPKEAPTDSDSESDDSHYRQTKRGSKRGRGRSHSRSPEHRSRSRSRRRRKSPRRRRDRRSRSRSRSPRYRRSRSRSPILRRTGDFGGENVKRDRGQCFGFVRGKCHRGASCRFSHHESDKNVSLRRHRNKYDQEVHSHAKHVSDGIRSQGVDQKQETNEKENSVRYANLPNTSGIDSQSVRNDPIKSESFRETVLEMKESLVGFLPEVLSGDDASKPCDGTNEDGVHAEDNSFVHKIQPNVPVGITEHPSYSSSIQTLPYMLPPTQPLSAPGSVGPSPSSRRPLLHSSSSVELPPHAYQLPPPPVVSHALGENAVNLPQISRDYGVTQKNTLFPFQPTTRDKFEPSPALIHMQSPHFSVPLPPNYPWTSLPLPPPPPLPSQVAHNPSISSGVSTSYVSSEFNQTQLHSRGDFVSLTSGKPGLPSHSQSSEFQDHAYPANQLLSGPNVSGEDHYKQLPMQDSNLSSSGGSHRLQNQYSWQSDAIRIQPSVGANLPPEDHFKTSSHTLASSQKQQPVHSFQYSASEGNLGVPGETVTLSRYPPDVLDSNHSTSLPTFVGSGIPAHCNPYASTFEQPLTSKLSSTIFRQESDVIHGDNNSGLNPISINREGAVGVEPKSSRANQYDPLFDSIEPPLSSLKKFDFEKQEVTGESNVSLRPKSSNMPLDAEEQNKHEEVGAVASTTSQNNDEYGETADAEVDDVENESLSNHVDVANMTPGEVEINQTKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRMPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKS* 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 174 191 - -
Ahy20g2420 1459 ProSiteProfiles Zinc finger C3H1-type profile. 731 758 IPR000571 GO:0046872
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 774 823 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 662 716 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1051 1070 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1314 1329 - -
Ahy20g2420 1459 Pfam Surp module 272 321 IPR000061 GO:0003723|GO:0006396
Ahy20g2420 1459 SUPERFAMILY Surp module (SWAP domain) 253 325 IPR035967 GO:0003723|GO:0006396
Ahy20g2420 1459 Coils Coil 1453 1459 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 555 570 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 71 95 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 802 823 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1 95 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 174 200 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 912 927 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 114 153 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1095 1113 - -
Ahy20g2420 1459 PANTHER EXPRESSED PROTEIN 1 1458 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 14 29 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1355 1376 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 902 929 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 774 801 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 606 732 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 120 141 - -
Ahy20g2420 1459 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1458 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1138 1152 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 408 438 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1286 1340 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1079 1113 - -
Ahy20g2420 1459 ProSiteProfiles SURP motif repeat profile. 271 318 IPR000061 GO:0003723|GO:0006396
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 613 661 - -
Ahy20g2420 1459 Gene3D Surp module 257 329 IPR035967 GO:0003723|GO:0006396
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 521 570 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 1128 1152 - -
Ahy20g2420 1459 MobiDBLite consensus disorder prediction 233 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2420 Ahy-Chr20 129318062 129325226 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy20g2420 Surp 4.30E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2420 - - ahf:112784154 2550.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2420 20 129318062 129325226 Ahy20g2420 20 129318062 129325226 ECH
Ahy20g2420 20 129318062 129325226 Ahy10g1932 10 104925714 104932840 hybridization