Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2415 ATGGAAAGCAGCAGCAACAACCAGTGGAGTGCTGAGGAAGCCATTGGTGGCAATGCCCAACCTCTTCAAGCACTCAGAGAAATCATCATCTTCCCGCGCCTATTTTCTCGACAAGCGCAGAGCCTTGGCCTCAAATGGCCACGGGGATTGCTGCTCTATGGCCCACCAGGCACTGGAAAGACGAGTTTGGTTCGAGCAGTGGTTCGGGAATGTGGGGCGCATTTGAAAATTATTAGTCCGCACATGGTGCACAGAGCACATGCCGGTGAAAGTGAGAAAATTCTCCGAGAGGCTTTTGCTGAGGCAGCATCTCAAGTAGCTTTGGGCAAGTCATCAGTTATCTTTATAGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCTAAGGAGCAAGATGTCCGAGTTGCCTCACAACTCTTTACACTCATGGACTCTAATAAACCCACGTCTTCTACAGCAGGAGTCGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCCGCTCTAAGAAGATCCGGACGTTTTGATGCTGAAATTGAAGTTACTGTTCCAAATGAAGAAGATCGCTTTCAAATTCTTAAGCTGTATACAAAAAAGATTCCATTGGATCCCAATGTTAACATAAAAATCATTGCTGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCATTGTGTCGTGAAGCTACCATGTTTGCAATTAAAAGGTCAAATACAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGATTGGCAAAACGCAAGGTCCATTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTTGAAGTTCCCAAAGTGACTTGGGAAGACATTGGGGGATTAAAAGATTTGAAGAAAAAACTTCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGATGCATTTTCAAGATTGGGAATATCTCCCGTACGTGGAATTCTTCTCCATGGACCTCCAGGATGCTCAAAAACAACCCTTGCTAAAGCTGCTGCTCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTCTGCTCCGTAACACATTTCAGAGAGCCCGACTCGCGGCACCCAGTATAATATTCTTTGATGAGGCTGATGTTGTAGCTACAAAACGAGGTGATAGTTCAAGCAATAGTGCGACAGTTGGTGAGAGGCTTTTATCCACTTTGTTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTCTGGCAGCAACAAATCGCCCTTACGCGATTGACGCTGCACTCATGCGTCCAGGACGTTTTGATCTGGTTCTTTATGTGCCACCGCCTGATTTGGAGGCTCGATATGAGATACTTTGTGTCCATACGCGTAATATGAAAACCGCGAGTGACGTCAATCTCAGACTACTAGCAGAAGACACTGAACTCTTTACAGGAGCTGAACTGGAGGGGTTATGCAGGGAAGCTGGAATTGTGGCTCTAAGGGAAGACATATCCGCCACCGTTGTATGCGATCGTCATTTCCAGATAGTGAAAGATTCTGTAAACCCAGCACTAACAAAAGCTGAAATTGATTCATACTCATCTTTTATGAAGACCTCATCTCAAGCTTTTCCTAAACATTTTGATTCAGATATGGAATTAGATAGGAGCAAAAAGAATGGGTTCAATCCTATGTCTTTGGTTAAAATTAGTGTTGCCAGTTTTGTATTACTTGCTGCTGCTAAATACTATAACATAGGTGGAGACCAAATTGTACCTCATACACCAATGACCTGA 1806 0.4363 MESSSNNQWSAEEAIGGNAQPLQALREIIIFPRLFSRQAQSLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLKIISPHMVHRAHAGESEKILREAFAEAASQVALGKSSVIFIDEIDALCPRRDSKEQDVRVASQLFTLMDSNKPTSSTAGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKKIPLDPNVNIKIIAASCNGYVGADLEALCREATMFAIKRSNTNEDAINFSLTMEDWQNARSIVGPSITRGVTVEVPKVTWEDIGGLKDLKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVATKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRNMKTASDVNLRLLAEDTELFTGAELEGLCREAGIVALREDISATVVCDRHFQIVKDSVNPALTKAEIDSYSSFMKTSSQAFPKHFDSDMELDRSKKNGFNPMSLVKISVASFVLLAAAKYYNIGGDQIVPHTPMT* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2415 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 535 IPR027417 -
Ahy20g2415 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 265 IPR027417 -
Ahy20g2415 601 Gene3D - 453 544 - -
Ahy20g2415 601 Pfam AAA+ lid domain 207 255 IPR041569 -
Ahy20g2415 601 Pfam AAA+ lid domain 473 518 IPR041569 -
Ahy20g2415 601 Pfam ATPase family associated with various cellular activities (AAA) 318 450 IPR003959 GO:0005524|GO:0016887
Ahy20g2415 601 Pfam ATPase family associated with various cellular activities (AAA) 50 183 IPR003959 GO:0005524|GO:0016887
Ahy20g2415 601 ProSitePatterns AAA-protein family signature. 421 439 IPR003960 GO:0005524|GO:0016887
Ahy20g2415 601 CDD AAA 47 183 - -
Ahy20g2415 601 Gene3D - 268 452 IPR027417 -
Ahy20g2415 601 Gene3D - 1 186 IPR027417 -
Ahy20g2415 601 Gene3D - 187 267 - -
Ahy20g2415 601 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 399 418 - -
Ahy20g2415 601 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 54 73 - -
Ahy20g2415 601 PANTHER AAA-FAMILY ATPASE 19 522 - -
Ahy20g2415 601 SMART AAA_5 314 453 IPR003593 -
Ahy20g2415 601 SMART AAA_5 46 187 IPR003593 -
Ahy20g2415 601 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 19 522 - -
Ahy20g2415 601 CDD AAA 284 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2415 Ahy-Chr20 129175884 129182774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2415 249 554 Calmodulin-binding Proteins AT3G56690 45.752 2.10e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2415 - - gmx:100814288 974.541