Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2410 ATGGGAAGAGGGAAGGTTGTGCTGAAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATGATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCATGATGAAAACCATAGAGAGATATCATATGCACAAGTATAGCTTGCCACAGACCACCCAAGTAAGAAACCATGACACTCAGCCTCAGAATACTTACCAAGACTATGTGACATTGAAAGCATACGTAGAACTCCTACAACGTTCACAACGAAACCTTCTTGGAGAAGATCTAACCAAAATGGCTTCAACGGAGCTTCAGCAGCTTGAGAATCAATTAGAGTCGGCATTAACAAATATTAGGTCAACTAAGACTCAATTCATGCTTGACCGTCTTGCTGATCTTCAGAATCGGGAGAGAGCGCTTGTTGATGTTAATACAGCTCTAAGAACTAAGTTAGAAGAAATTCAGAATTCAGAAGTTCCTCTGAGGTGGGCTTTGGATGGTGGAAGGCCTAACAACCAATGCACTCATCACTTTCCTCTTCAATCAGATTTTACTTTTCAAACTCATGGGGTTAATCCCAATTTGCGCATATGGTATAATAATCCCACGGTTGATGAAGAGGATGGAAATGTTGAAGCATGCGTCTCTGGTTGGATGCTATGA 732 0.418 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSNRGKLYEFSSSSSMMKTIERYHMHKYSLPQTTQVRNHDTQPQNTYQDYVTLKAYVELLQRSQRNLLGEDLTKMASTELQQLENQLESALTNIRSTKTQFMLDRLADLQNRERALVDVNTALRTKLEEIQNSEVPLRWALDGGRPNNQCTHHFPLQSDFTFQTHGVNPNLRIWYNNPTVDEEDGNVEACVSGWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2410 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 Pfam K-box region 85 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g2410 243 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Ahy20g2410 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Ahy20g2410 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy20g2410 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Ahy20g2410 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g2410 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 Coils Coil 120 147 - -
Ahy20g2410 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy20g2410 243 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2410 Ahy-Chr20 128960503 128968812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2410 1 243 MADS-box Gene Family AT5G15800 48.881 1.10e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g2410 K-box 6.50E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2410 K09264 K09260 gmx:100797819 281.182