Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2409 ATGGGGCGAGGGAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAGAGGAGAGCTGGTTTGGTTAAGAAGGCTAACGAGATCTCCGTTCTCTGTGATGCCGAGGTTGCTCTCATCATCTTCTCTACCAAAGGGAAGCTCTTTCAGTTCTCTAGCGATTCCTGTATGGAGAGGATAATCGAAAGGTATGAAAGGTATTCATATGCGGAGAGACAGCAGCTTGTGGCGAATGCTCAGGGACCAAATGCAAACTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTCTTACAAAGGAATCAAAGGCATTTTATGGGTGAAGATCTTCAAGGCCTAAGTATGAGAGAACTTCAGAATTTAGAACAACAGCTTGATTCTGCTCTTAAACAAATTAGATCACGAAAGAATCAAATCATGTATGAGAATATCTCACTGCTTCAGAAAAAGGAGAAAGCTCTAAATGAACAAAACAATTCACTAGCTAAGAAGATCAAGGGGAAAGAAAAAGCTACCACAGAACAGACTCGTCAATTGGAGCTGCAAGATAATTATACTGTTGCACCTCAAACCTCAGAAAACTTGAATATTAGAGGAATGCCACAAGATAGAAGTGATAATGAAGAACATAATGATAATGAAGAAGGTATCCAAATTAATGCTAGTGCTAATATCCTTCTTCCCAATTGGATGATTCCTCCTACAAATGAATAG 738 0.3997 MGRGRVQLKRIENKINRQVTFSKRRAGLVKKANEISVLCDAEVALIIFSTKGKLFQFSSDSCMERIIERYERYSYAERQQLVANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIKGKEKATTEQTRQLELQDNYTVAPQTSENLNIRGMPQDRSDNEEHNDNEEGIQINASANILLPNWMIPPTNE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2409 245 Coils Coil 89 109 - -
Ahy20g2409 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 222 - -
Ahy20g2409 245 Coils Coil 123 146 - -
Ahy20g2409 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Ahy20g2409 245 MobiDBLite consensus disorder prediction 197 220 - -
Ahy20g2409 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g2409 245 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Ahy20g2409 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Ahy20g2409 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g2409 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Ahy20g2409 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy20g2409 245 Coils Coil 152 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2409 Ahy-Chr20 128926456 128935336 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2409 1 211 MADS-box Gene Family AT1G26310 57.642 2.92e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g2409 K-box 2.40E-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2409 K09264 - rcu:8265057 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2047 11 130139630 130147632 Ahy20g2409 20 128926456 128935336 ECH
Ahy14g3054 14 139311563 139316915 Ahy20g2409 20 128926456 128935336 ECH
Ahy20g2409 20 128926456 128935336 Ahy20g2409 20 128926456 128935336 ECH
Ahy20g2409 20 128926456 128935336 Ahy10g1921 10 104624010 104632518 hybridization
Ahy11g2048 11 130202440 130208756 Ahy20g2409 20 128926456 128935336 PCT
Ahy1g2876 1 109431330 109437260 Ahy20g2409 20 128926456 128935336 PCT
Ahy20g2409 20 128926456 128935336 Ahy11g2048 11 130202440 130208756 PCT
Ahy20g2409 20 128926456 128935336 Ahy1g2876 1 109431330 109437260 PCT