Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2377 ATGAACCACTCTTCAGCAGATCATGATCGGGATCAGTACCTAAAGAAGCGAAAATCCAGTGCTGATTCCTCGTCAAGCATGAGGAAATCCAGCGCAAGGAGAAGATTCAGCAGCAGCAAGAATTCGAACAACAACGACGACAACAAAGGCGGTGGAGGCGGAGGCGGAGGCGTGTCGACGACGCTGAAGCTGTACGACGATCCATGGAAAATAAAGAAGACGTTAACGGACAGCGACCTCGGGATCCTGAGCAGGCTGTTGCTGGCAGCTGATTTGGTGAAGAAGCAGATCCTTCCGATGCTGGGCGGCGATGACGCTCGAGCGGCGGAGACGGAAGAAGGAACTCCGGTGAGAGTGTGGGACATGGACACCAGATCCATGCACCACTTGGTCCTGAAGCGTTGGTCATCTTCCAAAAGCTATGTTCTTATTGGAAAATGGAATCAAGATTTCGTCAGAAGACGGGACCTCAAGAAAGGTGATGAGATTGGCTTCCACTGGGATCCCTATAACTGCGCCTTCAACTTCTGCGTTCTTACACGCGCCTCCTCCTCCTCCTCCACCTGA 567 0.5238 MNHSSADHDRDQYLKKRKSSADSSSSMRKSSARRRFSSSKNSNNNDDNKGGGGGGGGVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGGDDARAAETEEGTPVRVWDMDTRSMHHLVLKRWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCAFNFCVLTRASSSSST* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2377 188 CDD B3_DNA 69 179 IPR003340 GO:0003677
Ahy20g2377 188 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 15 182 - -
Ahy20g2377 188 Gene3D - 68 186 IPR015300 -
Ahy20g2377 188 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 15 182 - -
Ahy20g2377 188 MobiDBLite consensus disorder prediction 1 58 - -
Ahy20g2377 188 SUPERFAMILY DNA-binding pseudobarrel domain 67 178 IPR015300 -
Ahy20g2377 188 MobiDBLite consensus disorder prediction 1 23 - -
Ahy20g2377 188 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2377 Ahy-Chr20 128050250 128051255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2377 51 172 RAV Transcription Factor Family AT1G51120 36.000 1.48e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2377 - - pvu:PHAVU_009G204600g 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2377 20 128050250 128051255 Ahy10g1897 10 103965359 103966886 hybridization